RNA id: XR_006251340.1


Basic Information

Item Value
RNA id XR_006251340.1
length 548
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC122348541
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13294117 ~ 13295055 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

catttaaacttcaacatttctgagatgcatttcaCCTTTTGGAGCAGCCAAaaGTCACAGGTCTGCTAGACGAAGGCTACTGATCCTGATGTGGAGGGCTTGAGGTGGCCACTGTCTTCACAATGAACCCAGTAGTTGGAATCAGTTCACACAAATCCAAAGCTTcctgatacatacacacatacatacgGTACAGTAATCGTGGTAGCAGACTTACCATCAGTCAGCTGGAAACCAAAGGGCTCTGCAACAAAGTGTGGTTTGGGATCAGCTGGCTCTGGATTCGGCTCCGAGTTCTCTTGTAGAGGCACAAATGGCTCAACTCTGGTCCCGCGGCAGCAGCAGAAGGAGGGCCACTTTAAGGGCTTCCGTGCTTTcttaaagactgaagaaatccctttcttcatccttttcctcaaaccggggtgtttttctaaaaatcattcaaaaagactgaatcatttgcatatgccagtgcactgtgctggtatttactatctacacaaatgtcccaggttttactgtactttcgtTCTTACCTGTGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4311 lncRNA upstream 122184 13170087 ~ 13171933 (+) True G2995
TU4280 lncRNA upstream 138320 13023428 ~ 13155797 (+) True G2967
TU4276 lncRNA upstream 154881 13023428 ~ 13139236 (+) False G2967
TU4275 lncRNA upstream 156431 13023428 ~ 13137686 (+) False G2967
TU4279 lncRNA upstream 156431 13023428 ~ 13137686 (+) False G2967
XR_006248829.1 lncRNA downstream 1817 13296872 ~ 13300061 (+) True LOC122334852
TU4415 lncRNA downstream 1916 13296971 ~ 13299839 (+) False LOC122334852
TU4417 lncRNA downstream 5064 13300119 ~ 13305686 (+) True G3077
XR_006251668.1 lncRNA downstream 6946 13302001 ~ 13305303 (+) True LOC122350991
TU4418 lncRNA downstream 7125 13302180 ~ 13310359 (+) False LOC122350991
XM_043243708.1 mRNA upstream 77421 13210594 ~ 13216696 (+) True chrna9a
XM_043244055.1 mRNA upstream 88401 13203059 ~ 13205716 (+) True rhoh
XM_043243467.1 mRNA upstream 92581 13190665 ~ 13201536 (+) True n4bp2
XM_043243921.1 mRNA upstream 126518 13161823 ~ 13167599 (+) True ube2kb
XM_043243868.1 mRNA upstream 146748 13141579 ~ 13147369 (+) True lias
XM_043238294.1 mRNA downstream 95047 13390102 ~ 13398726 (+) True haspin
XM_043238303.1 mRNA downstream 95049 13390104 ~ 13398726 (+) False haspin
XM_043250258.1 mRNA downstream 127977 13423032 ~ 13434220 (+) True ncapg
XM_043250248.1 mRNA downstream 128035 13423090 ~ 13434220 (+) False ncapg
XM_043250240.1 mRNA downstream 128576 13423631 ~ 13434220 (+) False ncapg
TU4406 other upstream 88429 13203253 ~ 13205688 (+) False rhoh
TU4187 other upstream 576611 12713532 ~ 12717506 (+) False dnah6
TU4185 other upstream 603847 12686245 ~ 12690270 (+) False dnah6
XR_006251287.1 other upstream 636522 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other upstream 645714 12644679 ~ 12648403 (+) False kdm4c
TU4563 other downstream 819376 14114431 ~ 14118433 (+) True G3187
TU4564 other downstream 819376 14114431 ~ 14115440 (+) False G3187
TU4698 other downstream 1185189 14480244 ~ 14481346 (+) True LOC122345399
TU4804 other downstream 1307621 14602676 ~ 14603849 (+) False lrata
TU4844 other downstream 1428490 14723545 ~ 14791788 (+) False G3380

Expression Profile