RNA id: XR_006251672.1


Basic Information

Item Value
RNA id XR_006251672.1
length 982
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC122351005
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13312094 ~ 13315805 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGGTGGAAACAagctgaaattcaaataatgcgagttttaaaacagcgctttattacgccctttaaataaagatacatttcaaTAGACTttcgcattttattttcatacatgagTGTGTCTTTGTAACGCCCTGGAAAAAGCAGGGGAAAATAACCCCGATGCTTCTcgttgaaaacttttactcgTACGAGTAACTCTCGCGATGTCACAACACTTCCTCAGCAGGCTCTGAGTCGCGTGAAGAAGTTCTCGCGATACTCCCCGCAAaggtatattaccacacccaatcaattgctcccagaagaatggatgctttcacttggcAATCGCTGCCCAATCAAACCGGCACCTACACTATTATTTCCCCcgacgctctcacacacactcccgaaagagccacctgtgttacataaactactgaatggaatgaaatatatatcaaaccaaaccaaatatatttccatttgaacagaaccgTTACCGTGGCAAACTTGGTCCATTTTAGACCCATACCATGTAAAATGAACAAGCCCCCAAATACTATTTGATACTACACAGTAGATGGCGATAATGCTCTATTAAGAAAGCAATCTTCCAATCAGCTCAAAGTAGAAAGTTTTCTCAGCCGCTGGATGTCGCTGTACGAGCAGGTCTGCGTGTGAATATCAGCCGAAGAAAAGACAACAATGGCGGCGACCTGCTCGTGGAAGTTAGACAAAGAAACGGGGCAGGATGCGCTTATCGGTCACAGGTCTGCTAGACGAAGGCTACTGATCCTGATGTGGAGGGCTTGAGGTGGCCACTGTCTTCACAATGAACCCAGTAGTTGGAATCAGTTCACACAAATCCAAAGCTTcctgatacatacacacatacatacgGTACAGTAATCGTGGTAGCAGACTTACCATCAGTCAGCTGGAAACCAAAGGGCTCTGCAACAAAGTGTGGTTTGGGATCAGCTGGCTCTGGATTCGGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4418 lncRNA upstream 1735 13302180 ~ 13310359 (+) False LOC122350991
TU4417 lncRNA upstream 6408 13300119 ~ 13305686 (+) True G3077
XR_006251668.1 lncRNA upstream 6791 13302001 ~ 13305303 (+) True LOC122350991
XR_006248829.1 lncRNA upstream 12033 13296872 ~ 13300061 (+) True LOC122334852
TU4415 lncRNA upstream 12255 13296971 ~ 13299839 (+) False LOC122334852
XR_006251752.1 lncRNA downstream 43897 13359702 ~ 13362727 (+) True LOC122351401
XR_006249007.1 lncRNA downstream 48297 13364102 ~ 13368029 (+) True LOC122335725
XR_006251779.1 lncRNA downstream 54373 13370178 ~ 13373235 (+) True LOC122351590
XR_006251679.1 lncRNA downstream 64763 13380568 ~ 13384220 (+) True LOC122351052
TU4421 lncRNA downstream 68186 13383991 ~ 13384199 (+) False LOC122351052
XM_043243708.1 mRNA upstream 95398 13210594 ~ 13216696 (+) True chrna9a
XM_043244055.1 mRNA upstream 106378 13203059 ~ 13205716 (+) True rhoh
XM_043243467.1 mRNA upstream 110558 13190665 ~ 13201536 (+) True n4bp2
XM_043243921.1 mRNA upstream 144495 13161823 ~ 13167599 (+) True ube2kb
XM_043243868.1 mRNA upstream 164725 13141579 ~ 13147369 (+) True lias
XM_043238294.1 mRNA downstream 74297 13390102 ~ 13398726 (+) True haspin
XM_043238303.1 mRNA downstream 74299 13390104 ~ 13398726 (+) False haspin
XM_043250258.1 mRNA downstream 107227 13423032 ~ 13434220 (+) True ncapg
XM_043250248.1 mRNA downstream 107285 13423090 ~ 13434220 (+) False ncapg
XM_043250240.1 mRNA downstream 107826 13423631 ~ 13434220 (+) False ncapg
TU4406 other upstream 106406 13203253 ~ 13205688 (+) False rhoh
TU4187 other upstream 594588 12713532 ~ 12717506 (+) False dnah6
TU4185 other upstream 621824 12686245 ~ 12690270 (+) False dnah6
XR_006251287.1 other upstream 654499 12644679 ~ 12657595 (+) False kdm4c
TU4563 other downstream 798626 14114431 ~ 14118433 (+) True G3187
TU4564 other downstream 798626 14114431 ~ 14115440 (+) False G3187
TU4698 other downstream 1164439 14480244 ~ 14481346 (+) True LOC122345399
TU4804 other downstream 1286871 14602676 ~ 14603849 (+) False lrata
TU4844 other downstream 1407740 14723545 ~ 14791788 (+) False G3380

Expression Profile