RNA id: TU4804


Basic Information

Item Value
RNA id TU4804
length 966
RNA type TUCP
GC content 0.47
exon number 2
gene id lrata
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14602312 ~ 14603888 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTAGACTCGGTCGAAGATTTCGCGTATGGAGCTCAGATTACGGTCAACGATATGGATGTGAAAATGAAGTGTCAAGCGCTTGTGAGCGAGGAAGTCGCGAGGAGAGCGGAGAAGCTGGTCGGCGACATCCCGTACAGTTTATTGTGGAATAACTGCGAACATTTCGTGACGTATTGCAGGTACGGGACACCTGTGAGCCAGCAGACGGACAAGTTCTGTGACTGTCTGAAAACCATCATTCGGGACCAGAGAAGTGTGGCATTAACCGTCGGAATAGGAGTGATGTACATCCTGTGTTTTGGCCTGGCACCATCAACTACATTACCCACAATCCTTATTCCCTTCGTTATGTGGATGGCTGGCTGAGAGGCTCTTTCGCGTGACACTTTTCACATTAAACAACAAAGCTCAGTTTTAAAGGGGACAAGTACACAACAACGCAATGCATCAGTGCAGCAGTGGAATATGTGTAAACGTGCAAAGCACACAATGTTTAAGCatcatttgcttttttcttctAGCTATACGTCAAAAGATAAGCTGTATCATTTACATAGTTCATGGCAACATGCTGTTAACTCTTAAACAGTATTCTTAAACAGTATACCTAGAATTGGTAAAGCCAATATTGTTGTAGCTTAAAGTTACAGATTGCATGTACTGTTCACTAAAGGTGCCttatatttgtttatgattATTGATATAGAATCTCACTGGTAAAATCAGTCCCATTGAGGTACGGACAGTGATTTAAGACATAACATATATAAGCAGGCCTACCTGTAGcttttgtattgttattatcaaGCTCTGACGATGCTTTATTGTTAATttgtacagtttaaaatgtatatttaataccATATGTTTCAGAATGAGAACCAGAACAAGAAAACGCAGACCGAACAGTTTGATGAATGTTGGCATTAtgtatgaataaaatgattgcTTCTGGTTACTGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4761 lncRNA upstream 6129 14533015 ~ 14596547 (+) False G3326
TU4763 lncRNA upstream 6129 14533015 ~ 14596547 (+) False G3326
TU4764 lncRNA upstream 6129 14533015 ~ 14596547 (+) False G3326
TU4765 lncRNA upstream 6129 14533015 ~ 14596547 (+) True G3326
TU4767 lncRNA upstream 6129 14591216 ~ 14596547 (+) False G3326
TU4810 lncRNA downstream 8466 14612315 ~ 14612647 (+) False npy2r
TU4813 lncRNA downstream 11084 14614933 ~ 14615917 (+) True G3361
XR_006251986.1 lncRNA downstream 16810 14620659 ~ 14624093 (+) True LOC122353352
TU4828 lncRNA downstream 68465 14672314 ~ 14678944 (+) True G3370
TU4832 lncRNA downstream 77610 14681459 ~ 14774677 (+) True G3374
XM_043236070.1 mRNA upstream 13912 14583650 ~ 14588764 (+) True plrg1
XM_043241916.1 mRNA upstream 104362 14490784 ~ 14498314 (+) True LOC122346953
XM_043239123.1 mRNA upstream 143658 14425254 ~ 14459018 (+) True tmem131l
XM_043246881.1 mRNA upstream 178531 14413027 ~ 14424145 (+) True mnd1
XM_043247273.1 mRNA upstream 759285 13842778 ~ 13843391 (+) True LOC122350619
XM_043249760.1 mRNA downstream 1603 14605452 ~ 14607397 (+) True si:dkey-30k22.5
XM_043247980.1 mRNA downstream 6395 14610244 ~ 14612677 (+) True npy2r
XM_043249168.1 mRNA downstream 31371 14635220 ~ 14643239 (+) True gucy1a1
XM_043249080.1 mRNA downstream 31698 14635547 ~ 14643239 (+) False gucy1a1
XM_043249253.1 mRNA downstream 32127 14635976 ~ 14643239 (+) False gucy1a1
TU4698 other upstream 121330 14480244 ~ 14481346 (+) True LOC122345399
TU4563 other upstream 484243 14114431 ~ 14118433 (+) True G3187
TU4564 other upstream 487236 14114431 ~ 14115440 (+) False G3187
TU4406 other upstream 1396988 13203253 ~ 13205688 (+) False rhoh
TU4187 other upstream 1885170 12713532 ~ 12717506 (+) False dnah6
TU4844 other downstream 119696 14723545 ~ 14791788 (+) False G3380
TU4860 other downstream 119696 14723545 ~ 14791788 (+) False G3380
TU4849 other downstream 121223 14725072 ~ 14791788 (+) False G3380
TU4855 other downstream 121223 14725072 ~ 14791788 (+) False G3380
TU4847 other downstream 164866 14768715 ~ 14791788 (+) True G3380

Expression Profile