RNA id: XM_043225353.1


Basic Information

Item Value
RNA id XM_043225353.1
length 1369
RNA type mRNA
GC content 0.43
exon number 2
gene id lrata
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14602312 ~ 14603888 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCCGTATATAAATCCTCCTCGGGCTGTGAAGTCTGCGAAGCCTACAAGTCATAAAAATGCTAGACTCGCTGACGCTACTATTTGAGAAGCTCTTCCTTTTCTCGAACTTTCACATTTTCACAAGTCTCTGGCAGGAGGAGCCGGAGCGCGCGGTGAAATGGCCAGCGCTGAGGAGAGGAGATCTTCTGGAGGTGCAGCGCACTCTCTTCGTTCATTACGGCATCTACCTGGGCGACAACAGGGTGGCGCACCTGATGCCTGACATCATGCCGGTGTTGACCAACAACAAACAGCTCGTCAAGCCGGTCGTCACTAACAAAAGACTCATACTGGGCTGTATTTACAGAAACGCGAGCATACGCGTAGACTCGGTCGAAGATTTCGCGTATGGAGCTCAGATTACGGTCAACGATATGGATGTGAAAATGAAGTGTCAAGCGCTTGTGAGCGAGGAAGTCGCGAGGAGAGCGGAGAAGCTGGTCGGCGACATCCCGTACAGTTTATTGTGGAATAACTGCGAACATTTCGTGACGTATTGCAGGTACGGGACACCTGTGAGCCAGCAGACGGACAAGTTCTGTGACTGTCTGAAAACCATCATTCGGGACCAGAGAAGTGTGGCATTAACCGTCGGAATAGGAGTGATGTACATCCTGTGTTTTGGCCTGGCACCATCAACTACATTACCCACAATCCTTATTCCCTTCGTTATGTGGATGGCTGGCTGAGAGGCTCTTTCGCGTGACACTTTTCACATTAAACAACAAAGCTCAGTTTTAAAGGGGACAAGTACACAACAACGCAATGCATCAGTGCAGCAGTGGAATATGTGTAAACGTGCAAAGCACACAATGTTTAAGCatcatttgcttttttcttctAGCTATACGTCAAAAGATAAGCTGTATCATTTACATAGTTCATGGCAACATGCTGTTAACTCTTAAACAGTATTCTTAAACAGTATACCTAGAATTGGTAAAGCCAATATTGTTGTAGCTTAAAGTTACAGATTGCATGTACTGTTCACTAAAGGTGCCttatatttgtttatgattATTGATATAGAATCTCACTGGTAAAATCAGTCCCATTGAGGTACGGACAGTGATTTAAGACATAACATATATAAGCAGGCCTACCTGTAGcttttgtattgttattatcaaGCTCTGACGATGCTTTATTGTTAATttgtacagtttaaaatgtatatttaataccATATGTTTCAGAATGAGAACCAGAACAAGAAAACGCAGACCGAACAGTTTGATGAATGTTGGCATTAtgtatgaataaaatgattgcTTCTGGTTACTGCTGCTCGGATTTCTTACACTATTTTCATTCGAATAAAACTTGT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K00678 LRAT; phosphatidylcholine-retinol O-acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4761 lncRNA upstream 5765 14533015 ~ 14596547 (+) False G3326
TU4763 lncRNA upstream 5765 14533015 ~ 14596547 (+) False G3326
TU4764 lncRNA upstream 5765 14533015 ~ 14596547 (+) False G3326
TU4765 lncRNA upstream 5765 14533015 ~ 14596547 (+) True G3326
TU4767 lncRNA upstream 5765 14591216 ~ 14596547 (+) False G3326
TU4810 lncRNA downstream 8427 14612315 ~ 14612647 (+) False npy2r
TU4813 lncRNA downstream 11045 14614933 ~ 14615917 (+) True G3361
XR_006251986.1 lncRNA downstream 16771 14620659 ~ 14624093 (+) True LOC122353352
TU4828 lncRNA downstream 68426 14672314 ~ 14678944 (+) True G3370
TU4832 lncRNA downstream 77571 14681459 ~ 14774677 (+) True G3374
XM_043236070.1 mRNA upstream 13548 14583650 ~ 14588764 (+) True plrg1
XM_043241916.1 mRNA upstream 103998 14490784 ~ 14498314 (+) True LOC122346953
XM_043239123.1 mRNA upstream 143294 14425254 ~ 14459018 (+) True tmem131l
XM_043246881.1 mRNA upstream 178167 14413027 ~ 14424145 (+) True mnd1
XM_043247273.1 mRNA upstream 758921 13842778 ~ 13843391 (+) True LOC122350619
XM_043249760.1 mRNA downstream 1564 14605452 ~ 14607397 (+) True si:dkey-30k22.5
XM_043247980.1 mRNA downstream 6356 14610244 ~ 14612677 (+) True npy2r
XM_043249168.1 mRNA downstream 31332 14635220 ~ 14643239 (+) True gucy1a1
XM_043249080.1 mRNA downstream 31659 14635547 ~ 14643239 (+) False gucy1a1
XM_043249253.1 mRNA downstream 32088 14635976 ~ 14643239 (+) False gucy1a1
TU4698 other upstream 120966 14480244 ~ 14481346 (+) True LOC122345399
TU4563 other upstream 483879 14114431 ~ 14118433 (+) True G3187
TU4564 other upstream 486872 14114431 ~ 14115440 (+) False G3187
TU4406 other upstream 1396624 13203253 ~ 13205688 (+) False rhoh
TU4187 other upstream 1884806 12713532 ~ 12717506 (+) False dnah6
TU4844 other downstream 119657 14723545 ~ 14791788 (+) False G3380
TU4860 other downstream 119657 14723545 ~ 14791788 (+) False G3380
TU4849 other downstream 121184 14725072 ~ 14791788 (+) False G3380
TU4855 other downstream 121184 14725072 ~ 14791788 (+) False G3380
TU4847 other downstream 164827 14768715 ~ 14791788 (+) True G3380

Expression Profile