RNA id: XM_043247980.1


Basic Information

Item Value
RNA id XM_043247980.1
length 1966
RNA type mRNA
GC content 0.44
exon number 2
gene id npy2r
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14610244 ~ 14612677 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTTGTACGTGTGCCATATGCAAAACGACAGCGCGAAAGAGCAGAGCAAACAATATCGTATGGgaattacattatttatgagTAGCCTAAATCAACTGTAAACTGCTGCAAATATCATAAACGGAACGCGATGTTATTTTCACGTCATCTTAAACCGTGACTTTAACATTATTAGCATCAGCAATATAAGCTAGACTAGTGCTTAAACGAGGCTGCTTTTAAAACTGCAACGTCAGTAACCTTTGACAGACTTATTTTACTATGGAACATGTTTTAACGTAAttacataaacaataaaactgtaatCTGTTAGCGTTCATCTTTAAAGCTAGCTGCGGGTCATCGTGAAGTCCGATGTCAATCAGCAGTCTCGCGAGCGCTGCCGGGTCCGCGCGTGCAGAGACTCCAGCAGACGTCTCCCTCAGCGCATCGACTTCATTCCGACTTCTTGACGACCGTCGTCGAGTTAACCGTGATAAATGTGCTATggattcagtctttttttctcttctgcaaGACACGCACGTAACTTCACAAAATAAAGAAGAATAAGTGACTTAAGCGAACGAATGCTAACATGGATATAAGAACTGAAATGAACATATCTGAAGATGAAGTTCAGGCTGCAAACTGTTCTTCGCCAGCCACTCTCCAGGTCGACGGTGTCTTACTAGACGGTCTGGAAGACAGTACAAAACTGGTGGGTGTTCAGGTGATCCTGATTTTGGCTTACAGCACCATCATCGTCTTTGGAGTGACTGGGAACTCCTTGGTCATATATGTCGTGTACAAGTTTAAAAATTTACACACGGTGACTAACTATTTCATTGTCAACCTGGCGGTAGCAGACTTGTTGGTCAACACGTTGTGCCTGCCTTTCACTCTGATGTACACACTCTACGGAGAGTGGAAATTCGGACAGGTGATGTGTTACCTGTTACCATACGCACAAGGCTTAGCGGTCCACGTTTCGACCATCACACTCAACGTTATAGCTCTGGACAGATACCGCAGCATCGTCTACCACACGGAAACCAAGATGTCAAAAGACATGTGCGTGGTCGTCATCGTGATCACATGGGTGGCAAGCGCAATCATTGCCAGTCCTCTAGCTATCTTTCGTGAATACGTGACCTTTGACTTAACGCCTGACCAGACGATTCAAGGTTGCGCCGAGAAGTGGCCCGGGAGTAGTGCGGATGGGACCGTGTACAGCATCGCCATGTTTTTTCTACAGTACGGCCTACCGTTGTCAATCATTTCATTTGCATACACTCGGATCTGGAACAAACTGAGAAACCACGTCAGTCCCGGCGGCGGCCGTAGCGACCGCCATCAGCGGCGACAGAAAACGACAAAAATGCTGGTCGCTGTAGTTGTGGTCTTCACCGTTAGCTGGCTACCCTTTCACGCTTTTCAGCTTGCTGTGGATATCGATAGCAGTATATTGGAAATGAAAGACTTTAAATTGCTCTATACGGCTTTCCACATTGTGGCCATGTGCTCCACGTTCGCCAATCCCATCCTCTATGGTTGGATGAACAGGAACTATAGAAGATCTTTTATGGCTGTGTTCAAGTGCGGACGGTTAAACAAGGGAATGAGAAGGGTTTGTAGCAGCGAGACAGTAAGGGACAAATGTACACGTAATAAGCAAAGTACAATGGCGTTCACGCAAGAAAACACGTTGCTGTGAAGGCTGTTGGCTTTTTACAAAATGGGaacaaaatatggaaaaaaatccaaaaagtcTACTGTAAAGAAGGATTGTATGTAAATCTAAAGACCGAATCCTCTggtatttaacaattttatgagACATTTGTGGTGACTTTGTGACTAAACACTCAATTAGTTTGggatattgtatttttaatatgtatttggTAACTTGATGTTTAAAAAGAGTGAGGTATCTGGTGTTGAATATATTCTAGTGCTCGTGTCCTGTGaaagtaaatgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4761 lncRNA upstream 13697 14533015 ~ 14596547 (+) False G3326
TU4813 lncRNA downstream 2256 14614933 ~ 14615917 (+) True G3361
XR_006251986.1 lncRNA downstream 7982 14620659 ~ 14624093 (+) True LOC122353352
TU4828 lncRNA downstream 59637 14672314 ~ 14678944 (+) True G3370
TU4832 lncRNA downstream 68782 14681459 ~ 14774677 (+) True G3374
TU4867 lncRNA downstream 103323 14716000 ~ 14782839 (+) True G3384
XM_043249760.1 mRNA upstream 2847 14605452 ~ 14607397 (+) True si:dkey-30k22.5
XM_043225353.1 mRNA upstream 6356 14602312 ~ 14603888 (+) True lrata
XM_043236070.1 mRNA upstream 21480 14583650 ~ 14588764 (+) True plrg1
XM_043241916.1 mRNA upstream 111930 14490784 ~ 14498314 (+) True LOC122346953
XM_043239123.1 mRNA upstream 151226 14425254 ~ 14459018 (+) True tmem131l
XM_043249168.1 mRNA downstream 22543 14635220 ~ 14643239 (+) True gucy1a1
XM_043249080.1 mRNA downstream 22870 14635547 ~ 14643239 (+) False gucy1a1
XM_043249253.1 mRNA downstream 23299 14635976 ~ 14643239 (+) False gucy1a1
XM_043249375.1 mRNA downstream 31336 14644013 ~ 14659537 (+) True gucy1b1
XM_043249491.1 mRNA downstream 48981 14661658 ~ 14663101 (+) True fabp2
TU4804 other upstream 6395 14602676 ~ 14603849 (+) False lrata
TU4698 other upstream 128898 14480244 ~ 14481346 (+) True LOC122345399
TU4563 other upstream 491811 14114431 ~ 14118433 (+) True G3187
TU4564 other upstream 494804 14114431 ~ 14115440 (+) False G3187
TU4406 other upstream 1404556 13203253 ~ 13205688 (+) False rhoh
TU4844 other downstream 110868 14723545 ~ 14791788 (+) False G3380
TU4860 other downstream 110868 14723545 ~ 14791788 (+) False G3380
TU4849 other downstream 112395 14725072 ~ 14791788 (+) False G3380
TU4855 other downstream 112395 14725072 ~ 14791788 (+) False G3380
TU4847 other downstream 156038 14768715 ~ 14791788 (+) True G3380

Expression Profile