RNA id: TU4832



Basic Information


Item Value
RNA id TU4832
length 865
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G3374
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14681459 ~ 14774677 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTGCACAGCACTGTTGAGGAAGCAGCTGTTCTGGCCTGGCTCATTAAGAAGACCTTTGGTCAAAGCGAGAGAGATCATACTGCCCGGCTGGTAGGACTTGCCCAGCCCCGTCCCGCTCCAGGCACCTGTACCAGCCATGTTGCCTCCAGgctttttaaatagtttgaccCATGCCATGAGGTTGGAGCCTGGCCCACTCCAGCAAACAACCAGAGTCAATCACTGAAGCAACTTGAGGTTGATACATCTGTTTTAGGCAACATTAGTTCTCAGCAGTCCCTGTACCTGACAGAGAAGACCGACTTCACAGTGCCCTACAAAAAGAGCCAAATACACTGCACTGGGTTTCTTTTCGATGTGCAGGATTTGGCAGCACACCATTTGGATATAAAGAACCATTCAAAACAGTTGCTCTTTATTAAGTGGGAACATGTGACTTTTAGCCACAAGTTGCGGCACATTGCTTTATCAGTCCAGCAGTTACTATGACAATGATCTCACTCTGTCTCCTCGGTATGTGTGGATTCATCTGCATCCAGGCACACTGGTAATAAGAGGATGGATGCAGAGAGAAGAACAAATCCATTACTCTCCTCAGCATTTCCAGCAAAGTCAATGGAGGTCACTGAAGGGGGTCATTCATAAAGGCTCCTCAGAACAGGCACTGAAGTAGAACACTGGCTAACAAAGGAAGACctacagagagggagagacacaAAGACAAGGGTTGGGGGTGCAGGTGAGCAATATGAAGAGATAAAATCAATGTTGTTAAATAGAAAGCTACATCAGGGTACTACAGCCATTTTGTACACTGAAGTATTACATAAACGCTGATGCTATTTGCAATTAGGAATTATGTATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4828 lncRNA upstream 2515 14672314 ~ 14678944 (+) True G3370
XR_006251986.1 lncRNA upstream 57366 14620659 ~ 14624093 (+) True LOC122353352
TU4813 lncRNA upstream 65542 14614933 ~ 14615917 (+) True G3361
TU4810 lncRNA upstream 68812 14612315 ~ 14612647 (+) False npy2r
TU4765 lncRNA upstream 84912 14533015 ~ 14596547 (+) True G3326
TU4862 lncRNA downstream 87935 14862612 ~ 14869892 (+) True G3381
TU4923 lncRNA downstream 251033 15025710 ~ 15029067 (+) True G3432
TU4956 lncRNA downstream 256368 15031045 ~ 15034800 (+) True hemgn
TU4958 lncRNA downstream 256368 15031045 ~ 15032957 (+) False hemgn
TU4966 lncRNA downstream 262602 15037279 ~ 15037670 (+) True G3443
XM_043249491.1 mRNA upstream 18358 14661658 ~ 14663101 (+) True fabp2
XM_043249375.1 mRNA upstream 21922 14644013 ~ 14659537 (+) True gucy1b1
XM_043249168.1 mRNA upstream 38220 14635220 ~ 14643239 (+) True gucy1a1
XM_043240244.1 mRNA downstream 58026 14832703 ~ 14843409 (+) True mxd4
XM_043248441.1 mRNA downstream 73336 14848013 ~ 14849671 (+) True ndufb6
XM_043243382.1 mRNA downstream 75483 14850160 ~ 14853910 (+) True toporsa
XM_043243393.1 mRNA downstream 79533 14854210 ~ 14861916 (+) True LOC122348129
XM_043234871.1 mRNA downstream 164060 14938737 ~ 14959108 (+) True tet2
TU4804 other upstream 77610 14602676 ~ 14603849 (+) False lrata
TU4698 other upstream 200113 14480244 ~ 14481346 (+) True LOC122345399
TU4563 other upstream 563026 14114431 ~ 14118433 (+) True G3187
TU4564 other upstream 566019 14114431 ~ 14115440 (+) False G3187
TU4406 other upstream 1475771 13203253 ~ 13205688 (+) False rhoh
TU5171 other downstream 703421 15478098 ~ 15498680 (+) True G3599
TU5228 other downstream 878416 15653093 ~ 15653381 (+) True G3647
XR_006251846.1 other downstream 2798444 17573121 ~ 17608841 (+) False gab1
XR_006251260.1 other downstream 3472573 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other downstream 3472575 18247252 ~ 18282761 (+) False dclk2a

Expression Profile