RNA id: TU4862


Basic Information

Item Value
RNA id TU4862
length 2786
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G3381
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14862612 ~ 14869892 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTCACCGTGCTAAGTAAAGaacaaatataatgcattttctgaaaacttttttttttggttgccaTACCCTAATGCTGCGTCCCTACAGACACTTACTAGGATAGTATCATTAATGCCTCAAACCTcaaagttgattttttttttctgcagtttttGATTGAGAGTGACGCCGCGTGAAGGCATATTAAAAACGAACAACCGTCAACCATAAATTACTAAACTCACAGGaaggaaaataattaaaatgtttaatactcAAACAGCATAAAAACCCACAAACAATAGGCTACTTTAAATGATCATTAGCCTACAAATATGAAAGTGCATCACAGCGGCGCTCATTTCTtgactttttacagttttattcctgTCACATTAAGctatgtgataaatatgtagttactaaaaaaaaaaaaaacacacattagcGTTTAAATACTAGTGAGAAATTCGACCACGTCCATGTGGCCAGTCTGCCGTGCCACATCCACGGGTCGTAAATTGAAGTGATCTGTCGCGTTGGGGTCGGCGTTAAAGCGAACGAAGAGCCGCACGGTGTCGGTGAAGCCGGTTCTGGCCGCGTCGTGCAAAGGAGTGCTTCCTGTTCTGGGGTCAGGAACATTAGGATCTGCTCCGTGTTCCAGCAGCAGGTGAGCCAGAGGTGTGTTTCCCATCATCACCACCTGCGGGCTCAAAACACGTGCAatctgtataataataattgccccttcctttctattaaaaataaagaaataatcatACGAACACGAATTTCCGACTTTAAATGTCGTTATTTTGTTTCGGTAAGAACAGTGTAGCTGGTTGGTGCATAGTGCAGGCTATTAGTACAGTAGCAAGATTCATTATTTAACTGCTCATGTTGTAGGctaatgtttgattttattattacttaatattgtttttgtttgtagcaTACGAGTAGGCTATGCCTGCTTTGTAGCTTAAAGGCCTAATCTAAACACATTTCGTTAAAAATAGCTCGAGGACTGTAGGGTCTAATCACTCACTTAGTCATtgcttatgatttttttttgtaaaactatTACATCGTCGCTTTATTCCCGCGCAGACACGAGTAACACCATCTTTAGAGGAGCATGGGAATTAGGTGAATTTTTTTCAAACCTGACCACAACCTTCCTGAAGTGACAGCTGGACAAAAAGTTTTATCTGGATCATAATATTAGTACCCGGATGTATAAATGTCGACGCGGACagcctgttttattttttaagtatagcACGTACGCTACATTCACAAATATCAAACATTAGCTTTTTCTATGATTTACAATCGTTCTGGTAGTACAGAACtcttttgaaattaatttagacCGTTTAGGAATAgcataaacttaaaaaaaaaaaaaaagatttatgaagATAGATAAAACGCGACGACGAAATACTCCGCAGTCTATGAAACTCAAAAGTAGCCTACAGTTAATAAAACtggatgaattaaaaaaaaatttaagtagcTACAtgattttatatctttatatttctatattaatttGAACTGTTATTGTTGTGAGACTGTTAAAATATCACGAGTAGGCTACATTACATTTAAGACTAATAACACAAGGCAGGCTCGGCTTTTTTTTCCTACGAGTTTAAACGTGTCAGGTCACGTGTGTGGTTTTTCTTCtaacaagataaatgttttaaccTTGAATATAACACGTATAggataaatactttatttaaataagcatatttttctattacattacgaaaatgaataatattaaacatattcattGCCTATTAGAACTGCGTTATTGTCATGTTCCGAAAATTCACTACTCTGCAGACAACGTAAATATGAAatcaatgtaaataataataactataataaatatatacttataaaatcatattaaaccgagtgtaaaaaaaagaattaggcTAAACCAAATTCAAAAGTTAGGACAGGCTATTAAGTTGTAGGCCTATTACCATCAGATAAAATAACTTCGTATATTTCCTTTAGGCGcctttgtatgtttatatttaatatgttactTGTACATCTGCAGTCCGtcttatgtttgtgtttttacttgCTTGTTTATTGTCAGTGTGTCTTAAACCTACCTGTATAGGTGTTCTCCCGAATTTGTTAACGCCGTTCGCATCGACTCCGTTAGACAGTAAAAACTGAACACGGGAAGTATTTCCAGTCGCGGCTGCTTTGGTCAGTTCATCCTCGGCATGCATCATTTTTATCATCAGTCCACTGAAGGATTTCGCTTTGACAGGTAGAAGCGATAATAAATAATCATCTACTGGATAAGCTACTGCGAAAATAATCCAcatagcattttcattttcgtTTCCAGACGTGAAAGGATCCTCTAAGCTGGCTAAATACGTTAAATCGACTTCTTTATAAGGCTGCCGtgtcttattattattgcacGTATAGGGAGATATTTGTTCGGACTTGCCTCTGTTATGAACGTCACGGCAACTGCAGTAGTGCGTGCACTGCGCATGCGCACTCAAACAGCTGATCCAGGAAGACTCGAAGCTACGGTGACAACGGTTAAGGAGAAGGAACCGTCGGTGTTTTAAAACTGAcattaaagatattaaaaaacagTCGCGAGAACGGGTTTTGTTTGTCGGTGTCCACAATCAGAATTATAGGCTACACATTCAGGCAAATGCAGTTTGGGGTATTTTGGATAGGCTCTTTTGGAGTGATGGCtatccaggaaaaaaaaaaatcagattggTGAAGATGTTCTACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4881 lncRNA upstream 50469 14749316 ~ 14812143 (+) True G3394
TU4877 lncRNA upstream 52891 14745709 ~ 14809721 (+) True G3391
TU4867 lncRNA upstream 79773 14716000 ~ 14782839 (+) True G3384
TU4832 lncRNA upstream 87935 14681459 ~ 14774677 (+) True G3374
TU4828 lncRNA upstream 183668 14672314 ~ 14678944 (+) True G3370
TU4923 lncRNA downstream 155818 15025710 ~ 15029067 (+) True G3432
TU4956 lncRNA downstream 161153 15031045 ~ 15034800 (+) True hemgn
TU4958 lncRNA downstream 161153 15031045 ~ 15032957 (+) False hemgn
TU4966 lncRNA downstream 167387 15037279 ~ 15037670 (+) True G3443
TU4920 lncRNA downstream 193359 15063251 ~ 15114948 (+) True G3431
XM_043243393.1 mRNA upstream 696 14854210 ~ 14861916 (+) True LOC122348129
XM_043243382.1 mRNA upstream 8702 14850160 ~ 14853910 (+) True toporsa
XM_043248441.1 mRNA upstream 12941 14848013 ~ 14849671 (+) True ndufb6
XM_043240244.1 mRNA upstream 19203 14832703 ~ 14843409 (+) True mxd4
XM_043249491.1 mRNA upstream 199511 14661658 ~ 14663101 (+) True fabp2
XM_043234871.1 mRNA downstream 68845 14938737 ~ 14959108 (+) True tet2
XM_043251516.1 mRNA downstream 96542 14966434 ~ 14975992 (+) False arhgef38
XM_043251509.1 mRNA downstream 96544 14966436 ~ 14976255 (+) True arhgef38
XM_043248942.1 mRNA downstream 110480 14980372 ~ 14988078 (+) True g3bp2a
XM_043239520.1 mRNA downstream 118505 14988397 ~ 15004240 (+) True uso1
TU4844 other upstream 70824 14723545 ~ 14791788 (+) False G3380
TU4860 other upstream 70824 14723545 ~ 14791788 (+) False G3380
TU4849 other upstream 70824 14725072 ~ 14791788 (+) False G3380
TU4855 other upstream 70824 14725072 ~ 14791788 (+) False G3380
TU4847 other upstream 70824 14768715 ~ 14791788 (+) True G3380
TU5171 other downstream 608206 15478098 ~ 15498680 (+) True G3599
TU5228 other downstream 783201 15653093 ~ 15653381 (+) True G3647
XR_006251846.1 other downstream 2703229 17573121 ~ 17608841 (+) False gab1
XR_006251260.1 other downstream 3377358 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other downstream 3377360 18247252 ~ 18282761 (+) False dclk2a

Expression Profile