RNA id: TU4877


Basic Information

Item Value
RNA id TU4877
length 1468
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G3391
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14745709 ~ 14809721 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGATTATTCGGCAATCGCTGTGAATGTATTCCACCCTGTTAGGTGCATATTTTAATAACGTAAATGTTAAACAATAATAAGACAGTATATGTCCCTTATGCCATAATGGTATTTTTTATTCTTGcaacaaaaattattaataaataaaaatttattaaaacatgtacTCTTGTGTGCACATCTTTGCCAACAGGATggtaaataatataacaaagttgctctaaaaacatatatatgctGTTAATGCTCCTCacatcacaaaaataagacaaaagtATGGCCaacatttaatgttgttttcaaatattttcttgaATTCTAACAGGGTGGAAGAGAGCTTAACAGAGTGAAACGGCCTAACAGGGTGGAAGACCAGTGTTAACAGGTTCTAACAGCAAATGAGCTTTCAGTCATTGCATTATTTCCCATCTGCAATGCACCTGTATAATATTGTTTCAAaacataatattgtttattaataactaaaatCCAGATTTCCTTTTAGAGGAGGTACATTAATTTAGTTAAgttaatttaacttattttagaCTGTGCTTATGATACCCaacaaaagattaaatatttgttttttgttttttttttctacatatcGCCGCTCAGAAGTTTTAGATCAGCACGATTTTTAAAGTTACAGCAAATAcatcaaaaacagtaatactgtgaaatatttttgcaatttaaaatagcttactttaattatttctgttggtaaatctgaattttcagcatcgatTTTCTAGTTCATTAACTACAATACAATTGTACTTATATTACCACTCAAAATATTTATGGAGGTAGATTCATTGGCagcatacaataaatacaattatatcaGAATTTTAACCCTGTTAGTTTCACATTCCTCCCTGTTAGGTTTATAGATGTCACAAAAAACCCATGTTGAATTTGTGCCCCTCCACCCTTTAAAACACAATCAGTTTAACCCTTTGACACTGGTTTAGAGAAAGACAAGAGAATTTTGAACAAAGGCACAGTAGGTCAGAAGTCAAAGTTAAATGATGCCCGGTAGTCTCTTTCCCATTTCTTGTCTCGTTCTTCTTTCCTCTTAAGTTCTTTAGCACAGAGGGTTGTGCCTTTCTCCTGTCTCTTCTCCAGTCTTTTCTGTTTACGTACGTGTTGCACTGCCTGAGGATCTTTGGCCTGGAAGTGTGTGACTTTCGACTGTGGGCTAGCTCCATACCCCAGGCCGGCCTGGTCTCTCTTTAGTACAGTGCTTACTGGGTTTTTGCGTCCGGAGTGGGCGGGTCCGAGACCAGAAGCGGGGTCCCACCCCAAACGGAGCATCATTTTGTAGCTGTTGCTGGAAGAGGGCAGGCAGTATTGAGGGGTGGTTGGGGGGCGGAGCTCGCTGAACTGATGCAGTGTGGACCTGTTGTGTGTTTCAGTGCTGTCTGTGTAATGCACAGCACACAAATTACACCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4828 lncRNA upstream 66765 14672314 ~ 14678944 (+) True G3370
XR_006251986.1 lncRNA upstream 121616 14620659 ~ 14624093 (+) True LOC122353352
TU4813 lncRNA upstream 129792 14614933 ~ 14615917 (+) True G3361
TU4810 lncRNA upstream 133062 14612315 ~ 14612647 (+) False npy2r
TU4767 lncRNA upstream 149162 14591216 ~ 14596547 (+) False G3326
TU4862 lncRNA downstream 52891 14862612 ~ 14869892 (+) True G3381
TU4923 lncRNA downstream 215989 15025710 ~ 15029067 (+) True G3432
TU4956 lncRNA downstream 221324 15031045 ~ 15034800 (+) True hemgn
TU4958 lncRNA downstream 221324 15031045 ~ 15032957 (+) False hemgn
TU4966 lncRNA downstream 227558 15037279 ~ 15037670 (+) True G3443
XM_043249491.1 mRNA upstream 82608 14661658 ~ 14663101 (+) True fabp2
XM_043249375.1 mRNA upstream 86172 14644013 ~ 14659537 (+) True gucy1b1
XM_043249168.1 mRNA upstream 102470 14635220 ~ 14643239 (+) True gucy1a1
XM_043240244.1 mRNA downstream 22982 14832703 ~ 14843409 (+) True mxd4
XM_043248441.1 mRNA downstream 38292 14848013 ~ 14849671 (+) True ndufb6
XM_043243382.1 mRNA downstream 40439 14850160 ~ 14853910 (+) True toporsa
XM_043243393.1 mRNA downstream 44489 14854210 ~ 14861916 (+) True LOC122348129
XM_043234871.1 mRNA downstream 129016 14938737 ~ 14959108 (+) True tet2
TU4804 other upstream 141860 14602676 ~ 14603849 (+) False lrata
TU4698 other upstream 264363 14480244 ~ 14481346 (+) True LOC122345399
TU4563 other upstream 627276 14114431 ~ 14118433 (+) True G3187
TU4564 other upstream 630269 14114431 ~ 14115440 (+) False G3187
TU4406 other upstream 1540021 13203253 ~ 13205688 (+) False rhoh
TU5171 other downstream 668377 15478098 ~ 15498680 (+) True G3599
TU5228 other downstream 843372 15653093 ~ 15653381 (+) True G3647
XR_006251846.1 other downstream 2763400 17573121 ~ 17608841 (+) False gab1
XR_006251260.1 other downstream 3437529 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other downstream 3437531 18247252 ~ 18282761 (+) False dclk2a

Expression Profile