RNA id: TU4985


Basic Information

Item Value
RNA id TU4985
length 1634
lncRNA type read_through
GC content 0.42
exon number 2
gene id usp53b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14661474 ~ 14687860 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttaaagGatgtaaaaatggctttattgcCACAAATATCAAAACTCACAGTGCAAATGACACATGATTTACATACATGCTTTGTAAACTTCAGGGCTGCCAATTGTTAAATCCCCATATTATCAGGTTGAACATCTATGTTTGCAACATGTAAAAGTTTCACATCGTCCCACTAGAAAGTTTGGGAATGCTGATGTCATTTTAACCCCTCTTGAAAATCCTCTTGGCCTCGACTCCCTCATAGGTATAGCTctgtaagcaaaaaaaacaaacaaaaacccagtGACTCAGTGTTTTGATCTGAGGTTTCGTCTTCATTTGGTAATAAACAGCAACTCACCTGTACAAGTTCATCACCAATGATCTTCCTGGTTGTGACTAGCAGCTTTCCGTTGTCCTTGCGTGTGAACGTCCCCTTAAGCGTGTCACCCTCCATGACCCAGGATCCCTACAATCAGAAGGTCACAAGGTCAGACTCTGACATAGCAGTGATCTTAGTTGTTTCTTCAAGAggctttttttataaaagttacaCATTCTTGTCTGTCTCTCAAAAATTCGAAGTGAACTTTGTAGCTTCTGCccccattaaaaaaagaacatcgATTAAGCAAATAACCAGCTTGCAACATTGAGTAAACGTGACACTGATTTAACACAAAAGAGTTAATGTATAACTAATCAGGTCCATGTTATTGTTTGCATCACCGTTCGGCACTGCTCAACAAGCATCTCAACCTTTGCCCTTGATCATTACGCTTTTAGAAAAAGTTACAAAAGCCGTCACTGGACCCTTTCAAAAGACGTCTGCACCTGAAAAGTGCATATCAGTACCTCGAAGGTGCATATTAGTACTTGCCtcagtgatttattttgtacctttttgcAGCAATACCAAAGAACACCATTTTGTGTCGCCCAAAGAAGCTTTTGTGGAATCTGCACgtgagaaacaaaagaaaacagctgAGGTCACTGCACTTACTGTGAGCTCCGTGCCGTCTGCCAGGGAATAGTCGAAGGTGACACCCAGAGTAAAGTTAATTTCCAGTGTGCGGAAAGTGCTGACTTCCTTCACGTGGAACTTGTCTCCGGTCTGTTCCAGGGTGATCTTCAGGTTGTCATGAGAAGCTAGTTTCCTTTTAACCATGTTGATGCCTGTTGAAGATATACAGCGCACGCGCACCTTATAAATAATGCCTGCCTGAAATTCAAAGAATCCTGCAGCGTTTGATCTGGTATTCAGCAGTTCACCGGCTAGGCTGAGCTTGTGTGTGTCAACTCACCCATTTCTTCCATGAACTTCTCGTAGTTGTCATTGCGGTCGACTTTCCAGGTCCCGTTGAAGGTCATGATGACGGACTGCTGTGATTCTGACGGTGGCCTTACTTTACCCTGCCCTCGTCTTTTATACCTGCGTCGGTGACAGCACGCTGTCTTATCTAAATATTATCTTCATGCTGATGTGGCTGAGTAAAGCTCAACCGAGAATAAATCTTACCCTCCCTCCAGGCTATACATTACATATCCCAGCATGCCTTGCTTATTCACTAATTGTGCAAAAGAGTGGAGGCTTCGAGTCATTCCATGAGAACAAGCGCTCACTTGTATTGTGTGGTTCAAATATTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5004 lncRNA downstream 24887 14635694 ~ 14636587 (-) True G3475
TU4808 lncRNA downstream 50688 14610497 ~ 14610786 (-) True G3357
TU4745 lncRNA downstream 169836 14490724 ~ 14491638 (-) True G3318
TU4679 lncRNA downstream 248499 14412767 ~ 14412975 (-) True G3266
XR_006251753.1 lncRNA downstream 393689 14249605 ~ 14267785 (-) True LOC122351408
XR_006251739.1 lncRNA upstream 46518 14734378 ~ 14736414 (-) False LOC122351313
XR_006251737.1 lncRNA upstream 46996 14734856 ~ 14736414 (-) True LOC122351313
XR_006251961.1 lncRNA upstream 54248 14742108 ~ 14742636 (-) True LOC122353106
TU5038 lncRNA upstream 61527 14749387 ~ 14750174 (-) True G3493
TU5041 lncRNA upstream 70260 14758120 ~ 14759025 (-) True G3495
XM_043251218.1 mRNA downstream 38245 14615314 ~ 14623229 (-) False map9
XM_043251219.1 mRNA downstream 38274 14615314 ~ 14623200 (-) True map9
XM_043251220.1 mRNA downstream 41226 14615314 ~ 14620248 (-) False map9
XM_043251217.1 mRNA downstream 41226 14615314 ~ 14620248 (-) False map9
XM_043246123.1 mRNA downstream 64988 14592215 ~ 14596486 (-) True fgg
XM_043237166.1 mRNA upstream 16633 14704493 ~ 14706643 (-) True LOC122342943
XM_043237192.1 mRNA upstream 54785 14742645 ~ 14743676 (-) True LOC122342957
XM_043242889.1 mRNA upstream 91341 14779201 ~ 14784805 (-) True LOC122347500
XM_043254604.1 mRNA upstream 98539 14786399 ~ 14793366 (-) False synpo2b
XM_043255425.1 mRNA upstream 98539 14786399 ~ 14793366 (-) True synpo2b
TU4627 other downstream 777238 13882278 ~ 13884236 (-) False LOC122350629
TU4632 other downstream 818831 13841542 ~ 13842643 (-) False LOC122350606
unassigned_transcript_100 other downstream 1272149 13389253 ~ 13389325 (-) True trnar-ucg_69
unassigned_transcript_99 other downstream 1272968 13388434 ~ 13388506 (-) True trnar-ucg_68
TU4412 other downstream 1369751 13291296 ~ 13291723 (-) True G3072
TU5035 other upstream 58969 14746829 ~ 14748975 (-) True G3491
TU5081 other upstream 237225 14925085 ~ 14925363 (-) True G3522
TU5072 other upstream 332782 15020642 ~ 15029620 (-) True G3515
TU5142 other upstream 542679 15230539 ~ 15230886 (-) True G3571
XR_006251556.1 other upstream 1381317 16069177 ~ 16073920 (-) False alg11

Expression Profile