RNA id: TU5004


Basic Information

Item Value
RNA id TU5004
length 669
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G3475
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14635694 ~ 14636587 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatatatatatatatatataattgtataaaacaATGATGAAAAATACTGGTGCAGTACAATTACTGCATACTGTCGTGAGAATGAACACAATAATTCTGTATGGAAATTATAAATGATCGACAAATTGTCCAAATTTGAAGGACATTATAAATTCTCACAGATGTAAGATGACAAAAAATAACCTCTTACCAACTCATGTCTATCTGCTGTTTCATAACTCTGATCAATGCACTTCGTATTTTTTTTTACCTCCGGACACACCAGCTTTCGGATGCTCTCGCCCAGTGAATGCAGATTAACTTTGCTCCGGCTTATTTTGCGTCTGGGCAGAATGTTTGTATTTGTGCCCTGCACCTCTCTGGATACGGGCACAACATCGACCGCGCCGCTTTCCTCAAAGTCTGCGGGATCCTCGTTTCCCACGACCATGGAAAACGGGCATTCACCCGCAATCTTGAGATCCTTCAGTTTAGCGCAAAACATTCTTTGCGTAATAGTCCTCTCCAAACGTGCGGCCAAAAAAATATCTACATGGTGAATATCCGAGCGAGACCGTTCCTACCCATCTGAATCCAGGACAGGAGCGTTTCCACTATAGGTGCCGGACggatatcagcctagaaaatgtaatttccccGCGCGCGCACGTCTCATCCAGGACTAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4808 lncRNA downstream 24908 14610497 ~ 14610786 (-) True G3357
TU4745 lncRNA downstream 144056 14490724 ~ 14491638 (-) True G3318
TU4679 lncRNA downstream 222719 14412767 ~ 14412975 (-) True G3266
XR_006251753.1 lncRNA downstream 367909 14249605 ~ 14267785 (-) True LOC122351408
TU4640 lncRNA downstream 666914 13961708 ~ 13968780 (-) True G3232
TU4985 lncRNA upstream 24887 14661474 ~ 14687860 (-) False usp53b
TU4986 lncRNA upstream 24887 14661474 ~ 14663417 (-) False usp53b
TU4987 lncRNA upstream 24887 14661474 ~ 14687860 (-) False usp53b
TU5001 lncRNA upstream 50029 14686616 ~ 14714546 (-) False myoz2b
XR_006251739.1 lncRNA upstream 97791 14734378 ~ 14736414 (-) False LOC122351313
XM_043251218.1 mRNA downstream 12465 14615314 ~ 14623229 (-) False map9
XM_043251219.1 mRNA downstream 12494 14615314 ~ 14623200 (-) True map9
XM_043251220.1 mRNA downstream 15446 14615314 ~ 14620248 (-) False map9
XM_043251217.1 mRNA downstream 15446 14615314 ~ 14620248 (-) False map9
XM_043246123.1 mRNA downstream 39208 14592215 ~ 14596486 (-) True fgg
XM_043248985.1 mRNA upstream 26691 14663278 ~ 14684861 (-) False usp53b
XM_043248738.1 mRNA upstream 26691 14663278 ~ 14684860 (-) True usp53b
XM_043248892.1 mRNA upstream 26691 14663278 ~ 14684355 (-) False usp53b
XM_043248823.1 mRNA upstream 26691 14663278 ~ 14684353 (-) False usp53b
XM_043250189.1 mRNA upstream 50009 14686596 ~ 14692364 (-) True myoz2b
TU4627 other downstream 751458 13882278 ~ 13884236 (-) False LOC122350629
TU4632 other downstream 793051 13841542 ~ 13842643 (-) False LOC122350606
unassigned_transcript_100 other downstream 1246369 13389253 ~ 13389325 (-) True trnar-ucg_69
unassigned_transcript_99 other downstream 1247188 13388434 ~ 13388506 (-) True trnar-ucg_68
TU4412 other downstream 1343971 13291296 ~ 13291723 (-) True G3072
TU5035 other upstream 110242 14746829 ~ 14748975 (-) True G3491
TU5081 other upstream 288498 14925085 ~ 14925363 (-) True G3522
TU5072 other upstream 384055 15020642 ~ 15029620 (-) True G3515
TU5142 other upstream 593952 15230539 ~ 15230886 (-) True G3571
XR_006251556.1 other upstream 1432590 16069177 ~ 16073920 (-) False alg11

Expression Profile