RNA id: TU5072


Basic Information

Item Value
RNA id TU5072
length 1676
RNA type TUCP
GC content 0.40
exon number 2
gene id G3515
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 15020642 ~ 15029620 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatttatataaaatgctttgCTTCCCACAGATTAAGCacttacataataaaataaaggaaTGCAATCAAGGTTGTTTGGACaacatttagtaaatatttcagCAACAACACTTAAAATAGCATCTTTAACCTcttatttagattatatattcTAACATGTGCGTATCCATATAGAAACAGAGTTTAAAAGTATGGCTTGTTCAAATTTGTGAAAGGCTCCAAATGGAcgactatttttaaaatggccaTTTTGAGTGAAACACGATAATTCAGTAAAATGTGGCGGTCCTTACATGCATTTTGAACAGTTTGGCAGTTCATAGCAAGCATGTTGCAGAATGGGATCTTGTCAGTGGATGACAAAATTCAGAGGAATTACTGAACCTAAACCTGCCGGAAACCCAGCCAGTTCCCACGGTGCTACCGCttcagtgcatgctgggatttGTTTGAACACACAGAAAACTAAATCTCTTTAATATAACGTGATAATGCACACGTGTAGAACTCACGGTTTTCGAATGTACCTCCCTTTGTtctaaaaatgttgcatttgcaTAATTACGATCAAACTTTCATGCCGCAACACTCATCCATCAGCACAggaatttaaatagaaaatgaatctgaaaaagaaatctCATTACGGTTATATTCACGCGAAATTTCAAATAACCCAGTTCATAAAACGAAACGCGCAAATGCTCATTTACgccgttttttttaaaatagtaataaaacaaacatttaacaaatCTGATCATAAGCTTGCATAGTGCTAAAGTCTAATAAAAAATTTCCACAAAGGTTGTACAGTAAATAATGTGCACAAAACGTGCATACAAGGAATGACTTTCCATAAAGAGACGCTAAAAGTGGATGTAGACCATGTGTTTCCTCGAGGCACGGTCACATTAGCGAAATTTCGCGGGCAAAAAGGTCTATTGTCCGTTGTCAAAAGTGTAGCGATGAATGAAGTCACTTCAAATCCAAGCAGCTTTCCATTGGTCAATGGCTCAAATTTGAGTGACCAACCGCCAAGCGAACCGATTCCTCTAGGAATGACTGGACCGTACCTTTACAGCATAATTCATGAGGCGGAACATTTTCACGTGAATGTTAGTGAAGCGGACGAGGCTGTGAGACAGTGTTATGTACTATAGTCTCTTTTAAAGATTAGCTTGTGAGTTTCTAACATTTTTGATTTCTAATTCCAACTGTTTTATCCGCACATCCTTCTGGTTAAGCTGCTCCTTTAGTCTTCGGATCTCTTCCTGCTGCTTATAAAACATTTGTCGTAGCTATATGcagaaacaaatacatcaaCACACATTAGAGGAAGGTTTTTTGCTATATCTGAGCTATAGCTAGAAGCTATACGTAGCGTACCTCATTCTCTGTTTTAGGCGGCGAGCAGCGCGTGGAATCTAGTTGTCCGTTGCTGACGTAGCTTGTAGAGGTGCTCTTTGCATCTGTGGAGAGGAGCAGAGAGGTAGGGGGCGATTCTTTGTGTGCGTTCCCTTCTTTGGCATCCAGCCGTTCCTGAATCAGCAGTGATAGTCCTGGCCGACTGCGAGAGTGCTGCGTCTCCGTGGAGTCAGTCGAGTCTTTCCCTGAACCCAGTTCCACGTACGAGTCCAGTTTACTTCCAGGCCTCAGAGACATCATCACAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5112 lncRNA downstream 16354 15001285 ~ 15004288 (-) True G3546
TU5078 lncRNA downstream 101856 14898206 ~ 14918786 (-) False cxxc4
TU5052 lncRNA downstream 172066 14848025 ~ 14848576 (-) True G3502
XR_006249238.1 lncRNA downstream 246722 14772740 ~ 14773920 (-) True LOC122336348
XR_006249191.1 lncRNA downstream 247912 14771467 ~ 14772730 (-) True LOC122336242
TU5141 lncRNA upstream 199716 15229336 ~ 15229753 (-) True G3570
TU5143 lncRNA upstream 245264 15274884 ~ 15275311 (-) True G3572
TU5148 lncRNA upstream 274368 15303988 ~ 15306245 (-) True G3577
TU5149 lncRNA upstream 277028 15306648 ~ 15306904 (-) True G3578
TU5152 lncRNA upstream 280715 15310335 ~ 15310542 (-) True G3581
XM_043249976.1 mRNA downstream 41224 14976363 ~ 14979418 (-) True ints12
XM_043234883.1 mRNA downstream 57509 14959165 ~ 14963133 (-) True ppa2
XM_043227321.1 mRNA downstream 102026 14898201 ~ 14918616 (-) True cxxc4
XM_043228273.1 mRNA downstream 155509 14862844 ~ 14865133 (-) True cdkn2a/b
XM_043228349.1 mRNA downstream 155514 14862844 ~ 14865128 (-) False cdkn2a/b
XM_043249651.1 mRNA upstream 3549 15033169 ~ 15037691 (-) True trmo
XM_043249659.1 mRNA upstream 3549 15033169 ~ 15037675 (-) False trmo
XM_043249668.1 mRNA upstream 3549 15033169 ~ 15037675 (-) False trmo
XM_043249675.1 mRNA upstream 3549 15033169 ~ 15037675 (-) False trmo
XM_043233686.1 mRNA upstream 21199 15050819 ~ 15052876 (-) True foxe1
TU5081 other downstream 95279 14925085 ~ 14925363 (-) True G3522
TU5035 other downstream 271667 14746829 ~ 14748975 (-) True G3491
TU4627 other downstream 1136406 13882278 ~ 13884236 (-) False LOC122350629
TU4632 other downstream 1177999 13841542 ~ 13842643 (-) False LOC122350606
unassigned_transcript_100 other downstream 1631317 13389253 ~ 13389325 (-) True trnar-ucg_69
TU5142 other upstream 200919 15230539 ~ 15230886 (-) True G3571
XR_006251556.1 other upstream 1039557 16069177 ~ 16073920 (-) False alg11
XR_006250498.1 other upstream 2786204 17815824 ~ 17880417 (-) False znf827
TU6528 other upstream 4506352 19535972 ~ 19539146 (-) True cdk2ap2
unassigned_transcript_102 other upstream 5067335 20096955 ~ 20097026 (-) True trnae-cuc_3

Expression Profile