RNA id: TU5228


Basic Information

Item Value
RNA id TU5228
length 289
RNA type TUCP
GC content 0.49
exon number 1
gene id G3647
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 15653093 ~ 15653381 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AtttcccttttgttttttttttgttatggaTCCCTCTTATGACGACcccaacttcctcatcctcctgctggactccatctcggctcgtagacccatcggctccccctgggctcctagctccctcctcttcaccgtggtccgtcagtccaccagctgcaccaggctccatcgtctctctggctccgccttggtctgtcgtcgaccatccatcgcctcgggattcctctcctccggcttcgcctcaTCCGTCCATCCCATTGGCTcagtcaggctcctccttccctccggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5227 lncRNA upstream 64 15652830 ~ 15653029 (+) True G3646
TU5211 lncRNA upstream 17149 15632781 ~ 15635944 (+) True G3630
TU5165 lncRNA upstream 177613 15470622 ~ 15475480 (+) True G3593
XR_006251620.1 lncRNA upstream 206969 15445188 ~ 15446124 (+) True LOC122350773
TU5135 lncRNA upstream 335469 15314979 ~ 15317624 (+) False bnc2
XR_006251351.1 lncRNA downstream 11847 15665228 ~ 15668159 (+) True LOC122348671
XR_006251352.1 lncRNA downstream 11847 15665228 ~ 15668159 (+) False LOC122348671
TU5232 lncRNA downstream 30828 15684209 ~ 15685007 (+) True G3650
TU5258 lncRNA downstream 41006 15694387 ~ 15694699 (+) True G3674
TU5264 lncRNA downstream 45842 15699223 ~ 15699434 (+) True G3680
XM_043237424.1 mRNA upstream 337525 15178603 ~ 15315568 (+) False bnc2
XM_043244347.1 mRNA downstream 3916 15657297 ~ 15690847 (+) True psip1a
XM_043244337.1 mRNA downstream 3938 15657319 ~ 15690847 (+) False psip1a
XM_043246230.1 mRNA downstream 370558 16023939 ~ 16064272 (+) True raph1b
XM_043244609.1 mRNA downstream 410890 16064271 ~ 16066919 (+) True LOC122348759
XM_043247180.1 mRNA downstream 420934 16074315 ~ 16078793 (+) True cpb2
TU5171 other upstream 154413 15478098 ~ 15498680 (+) True G3599
TU4844 other upstream 861305 14723545 ~ 14791788 (+) False G3380
XR_006251846.1 other downstream 1919740 17573121 ~ 17608841 (+) False gab1
XR_006251260.1 other downstream 2593869 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other downstream 2593871 18247252 ~ 18282761 (+) False dclk2a
unassigned_transcript_101 other downstream 2925369 18578750 ~ 18578831 (+) True trnas-aga
TU6436 other downstream 3867703 19521084 ~ 19522399 (+) True G4528

Expression Profile