RNA id: TU5873


Basic Information

Item Value
RNA id TU5873
length 1249
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G4105
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 17745851 ~ 17747099 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tattgAATCTTCCAGTAGAGACTTGATATTCATGGAATAAAACTGCTTTCTGATAGTACAAGTAAGCAAGaacagcacaaaaaaaggaCAGAGACAAGAAGCCGCTTATGAAAGTGCAGATATGAAGGAACgacaatttatattttcttcaaaaaaatacaaaaatgtttacattttaacagtgGATGGGATTTCACTATGAATAAAAAATTGAGAGCAAGTTAATCAAAAATGAACTactttttacaaaacaatatcACTAGTGCCATTTAAAACTTAGTCAACAAAAAGGTCATTGCTTTAACCTAAAAATGCCGAGAACGCATAGGCatcatgtacatttttttctcttgctttttttaaggtgttttatgaaaacagaTTATTCGTGGtatttcagaaaagaaaaaaaaaaaagagaaaggaggATGTTCTTCTGTGCAGCACAGCGGTGCAGTGCACAACATATGGACAAGTAAACAATGCCTGCCTCTGCTCTCATAGACTTACAATCCTGGGGATCAAACCACACTTGCAAAAAAACAGACTGCACAGCACTTTCCCTACTAATAAGTACATTTACACACCCATTTTATAAATCAGTCGAACGCAACTGCAATAGAAGTAGCGCAACAAACGCACGAGTTTGCTCATGCATCCCTACCCACTACCAACATGCCCTAACTCCCCATACATTTATcccatttaaaagtgtttttgttcaaatatatgtatttttcattctACGACAGAcgtttttgtcttctttttttatttgctacattttttcttcttgccGGCTGTGAAAAATTTAGCATCAATAACCTCGTTATCCTTCTCACAGCTTCATGCCTTTCGGttcatttaaagcattatattttcttactttttttgtctATCAGACGTGTTCACGCTACACTACTCTGTACAACGCTGTACTAAGTCTCTAAGCTACAATGCAGATCTTTTTTTCGCCGATGGAATACTGATTTGTAAActgcaaaaaagagaaaaattaaaaaaaaaaaacgcaaaagaaagagaaagaaaaacaaattggCTTAAAACCCAACTTCTCTCACAAACAAGACCAAAGGAGGATACTTGCCACGAGGCCAAGTATGATGGCCTCGTCATTTAACATGCTTGGTCGCACAAAGTTGTCAAGTATCTTCCAGATTCTCACGGGCTGAGATCTGAGGACTCTTCAGCCAAAATGTATGCCCCCAAACAAACTGCCTTCAAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5867 lncRNA upstream 98389 17644218 ~ 17647462 (+) True G4099
TU5856 lncRNA upstream 138648 17583917 ~ 17607203 (+) False gab1
TU5849 lncRNA upstream 208814 17536825 ~ 17537037 (+) True G4088
TU5848 lncRNA upstream 210433 17535038 ~ 17535418 (+) True G4087
TU5845 lncRNA upstream 324735 17420774 ~ 17421116 (+) True G4084
TU5832 lncRNA downstream 149489 17896588 ~ 17898544 (+) False lsm6
TU5942 lncRNA downstream 466206 18213305 ~ 18215084 (+) True G4166
TU6140 lncRNA downstream 562835 18309934 ~ 18311341 (+) True G4296
TU6182 lncRNA downstream 851257 18598356 ~ 18599659 (+) True G4331
XR_006250297.1 lncRNA downstream 947070 18694169 ~ 18717089 (+) True LOC122340556
XM_043240258.1 mRNA upstream 20346 17693153 ~ 17725505 (+) True LOC122345793
XM_043249518.1 mRNA upstream 135106 17573125 ~ 17610745 (+) False gab1
XM_043241110.1 mRNA downstream 40323 17787422 ~ 17793399 (+) True mmaa
XM_043241874.1 mRNA downstream 40323 17787422 ~ 17793399 (+) False mmaa
XM_043240942.1 mRNA downstream 49254 17796353 ~ 17803631 (+) True zgc:152968
XM_043228154.1 mRNA downstream 149436 17896535 ~ 17898546 (+) True lsm6
XM_043243643.1 mRNA downstream 240440 17987539 ~ 17991324 (+) True pou4f2
XR_006251846.1 other upstream 137010 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 2092470 15653093 ~ 15653381 (+) True G3647
TU5171 other upstream 2247171 15478098 ~ 15498680 (+) True G3599
TU4855 other upstream 2954063 14725072 ~ 14791788 (+) False G3380
XR_006251260.1 other downstream 500151 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other downstream 500153 18247252 ~ 18282761 (+) False dclk2a
unassigned_transcript_101 other downstream 831651 18578750 ~ 18578831 (+) True trnas-aga
TU6436 other downstream 1773985 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 2365343 20112442 ~ 20112514 (+) True trnak-cuu

Expression Profile