RNA id: TU5942


Basic Information

Item Value
RNA id TU5942
length 1744
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G4166
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18213305 ~ 18215084 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAAGTTTTCTGTAAGGCAGACAGAGCCTGGATAGCCATCCCCTCTGGCAGAGAGAGGCCCCTGTGACAGGCCTGGGCGAGTTTTCCATGTCTCCATTAATCCAGTAACTGGAGAAATTAGATTCAACAAGGGGTTCGTCTGGTCCCTCAGATTGTGGCGTGAAAACGACATTGTTCCTTGCGCTCCGATCTGGTAATGAAATGAATGTCCACCTGAATTAACGCCAACAATAGCCGACGTGGGCACATTATTATTCTCTTGGTAATAGCTGCCATCATTGGTTTCCTGTTTAATCCCCTTAGGCAGGCCATTGTTAGGAAACACACCAGGTTCATAGTTGCCATTCAGAGACGAAACAGGAGGTCCCAAGATCCCAGAAAGACTATATTCGTCAATATTATCCCTCAAAGACAAGTATGTGGTCTCTGTAGAAGGAAAGCAGCCTAGAGAGTGCTGCGGCTCCACAAACTGGAGGTTCGAACAAGTCACCTCTCTGTTCGGCTCTGTTTTAATGTGAGTTACGAAAGGAGAATGTGGCATGGCGCTCTTGCTGCTGCCTAGGCACATACTCCTGTAATCAGTGCCAGGTTCGTTTTTGATATATTTGGCCACTCCCATAGCATCCAAGCCGATGTTAAATATTTCCCCATCCACATTTTCTACCTTCGGGAACTCGAATCCCTTGAAGTCGTGCTCTCGGCTCTCAGGGCTGTTGACATCATTTTGAACTAGGCCCAATCCACTGGGAGGGCTAGAGACCGAAAAGCCCCTGGATGAGTTCCTCGGACTGGACATGGTCATGCTGCCAACGGTGGGCGGACTGGAGATGGATGGTCGGATGTTACAGGTATTGCCTCCGTTTGTTGTTGGGCTTGAGACGGATGATCTCATATTGGTGTTACAGGAAAGCGGTGAGCTTATGCTACCCATGCTATGAGGACTGGAAACCGGAGACTTCATAACACTGAGGGGACTGGCCAGGGGAGGTGACCCCACCATGCTGGACTTTACAGGGCTACAGGTGTTGGGACTGGTGTGTTGACCTTGGGTCAAGTTTTTGCGTGTAGAAACCAGCGATGGACAATCAGAGTCAAAGAAGGTGGGGCTGGTAGTGGACGACACCATGTTGTGTCCGGTAGGACTAGAAGTGGGTCCAGACCCATCAGTGCTGCATGAAAGAGCAGTGGCCAGTGCAGAGGGCACTGAGGCAGAGACCACCCCGCACTCCTGAGGGCCACCATTGGGTAGCTGGGCCCCAGGTGGGAATGAAGCTGGGGGAGCTTTCATCTTTGGACTCCCAGTCGTTTTGGACTGGCTGTCTTCAATTGCCCTCCCACAAAGAGGATAGAGTTTCTCCGGGCTACCCTGCCCTCCTGCAGTACCTTGTTGAGCAAAGCTAAAGTCTGACTCCCTGGCAGCATTCATGTACAAGCCCATGGACTCAGCAACTGTTTTGGAGAGCTCCTTTGAGTCTGTTTCCGACTTGCGGTTGTGGAAGGAGTTGTTGAAGGAGGGAAAAGGTAACGGTTGATTCTGGTTAACTCTAAGCATTGTTGACTCTGTAGTTTTAAAGTTGTTGTCCTTGCAGGCAGATGGCACGTTAGGGGCACTGCGAGAGTTAACTTCGGCAGAACAGCAATACTCCATGGTGTTCGGCATCTGTGCCCATTTGTTTTCTGCATTTGCCCCTTCGCAGTAACTTTGGTATCTTTTAGTCTCCATACCTGGATCATTTGATAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5832 lncRNA upstream 314761 17896588 ~ 17898544 (+) False lsm6
TU5873 lncRNA upstream 466206 17745851 ~ 17747099 (+) True G4105
TU5867 lncRNA upstream 565843 17644218 ~ 17647462 (+) True G4099
TU5856 lncRNA upstream 606102 17583917 ~ 17607203 (+) False gab1
TU5849 lncRNA upstream 676268 17536825 ~ 17537037 (+) True G4088
TU6140 lncRNA downstream 94850 18309934 ~ 18311341 (+) True G4296
TU6182 lncRNA downstream 383272 18598356 ~ 18599659 (+) True G4331
XR_006250297.1 lncRNA downstream 479085 18694169 ~ 18717089 (+) True LOC122340556
TU6214 lncRNA downstream 479099 18694183 ~ 18694573 (+) False LOC122340556
TU6197 lncRNA downstream 491125 18706209 ~ 18708429 (+) True G4345
XM_043231600.1 mRNA upstream 65782 18101980 ~ 18147523 (+) True arhgap10
XM_043231680.1 mRNA upstream 65782 18101984 ~ 18147523 (+) False arhgap10
XM_043231757.1 mRNA upstream 65782 18113447 ~ 18147523 (+) False arhgap10
XM_043231862.1 mRNA upstream 118810 18086895 ~ 18094495 (+) True tmem184c
XM_043236361.1 mRNA upstream 130749 18071025 ~ 18082556 (+) True ednraa
XM_043243227.1 mRNA downstream 32167 18247251 ~ 18284644 (+) False dclk2a
XM_043243300.1 mRNA downstream 32167 18247251 ~ 18282799 (+) False dclk2a
XM_043243308.1 mRNA downstream 32168 18247252 ~ 18282799 (+) False dclk2a
XM_043243220.1 mRNA downstream 32169 18247253 ~ 18284644 (+) True dclk2a
XM_043243267.1 mRNA downstream 32169 18247253 ~ 18284644 (+) False dclk2a
XR_006251846.1 other upstream 604464 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 2559924 15653093 ~ 15653381 (+) True G3647
TU5171 other upstream 2714625 15478098 ~ 15498680 (+) True G3599
TU4855 other upstream 3421517 14725072 ~ 14791788 (+) False G3380
XR_006251260.1 other downstream 32166 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other downstream 32168 18247252 ~ 18282761 (+) False dclk2a
unassigned_transcript_101 other downstream 363666 18578750 ~ 18578831 (+) True trnas-aga
TU6436 other downstream 1306000 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 1897358 20112442 ~ 20112514 (+) True trnak-cuu

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU48442 True 1788 lncRNA 0.52 1 NC_047597.1 4667206 ~ 4668993 (-)
bowfin (Amia calva) TU124835 True 1762 lncRNA 0.44 1 CM030132.1 17802158 ~ 17803919 (-)
tiger barb (Puntius tetrazona) TU124835 True 808 TUCP 0.55 2 NC_056709.1 23392564 ~ 23393723 (-)