RNA id: TU6219


Basic Information

Item Value
RNA id TU6219
length 222
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id LOC122340556
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18694169 ~ 18717095 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAGAAACATCAGTTAGATATGTTGCAGTCGTATGCCAATATCTTCCATCAAAAGTGTGTGCAAGCGCAAAAGCTGTCAATGAGTTTCGTCATTTTCGGCTACATTTACATATGCCAGGTgttttgatcaaaagtgacccGCATGACATTCGCTAATTTATTGTCTGGCAATCAAACCCACGCTCTTGGCATTGTTAGCATcacgtttttttctttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6217 lncRNA upstream 1643 18714947 ~ 18715231 (+) True G4356
TU6197 lncRNA upstream 8445 18706209 ~ 18708429 (+) True G4345
TU6214 lncRNA upstream 22301 18694183 ~ 18694573 (+) False LOC122340556
TU6182 lncRNA upstream 117215 18598356 ~ 18599659 (+) True G4331
TU6140 lncRNA upstream 405533 18309934 ~ 18311341 (+) True G4296
TU6221 lncRNA downstream 5980 18723075 ~ 18723295 (+) True G4360
TU6222 lncRNA downstream 30139 18747234 ~ 18747753 (+) True G4361
XR_006248576.1 lncRNA downstream 276666 18993761 ~ 19176827 (+) True LOC122333031
TU6439 lncRNA downstream 807451 19524546 ~ 19524780 (+) True G4531
TU6463 lncRNA downstream 857316 19574411 ~ 19574760 (+) True G4553
XM_043233897.1 mRNA upstream 23486 18687317 ~ 18693388 (+) True cep44
XM_043233886.1 mRNA upstream 23486 18687782 ~ 18693388 (+) False cep44
XM_043233907.1 mRNA upstream 23486 18687817 ~ 18693388 (+) False cep44
XM_043233850.1 mRNA upstream 119237 18584156 ~ 18597637 (+) True galnt7
XM_043233820.1 mRNA downstream 122855 18839950 ~ 18858945 (+) False wdr17
XM_043233828.1 mRNA downstream 122895 18839990 ~ 18858945 (+) True wdr17
XM_043233802.1 mRNA downstream 127095 18844190 ~ 18858945 (+) False wdr17
XM_043233805.1 mRNA downstream 127096 18844191 ~ 18858945 (+) False wdr17
XM_043234072.1 mRNA downstream 151587 18868682 ~ 18872848 (+) True spcs3
unassigned_transcript_101 other upstream 138043 18578750 ~ 18578831 (+) True trnas-aga
XR_006251260.1 other upstream 434113 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other upstream 434113 18247252 ~ 18282761 (+) False dclk2a
XR_006251846.1 other upstream 1108033 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 3063493 15653093 ~ 15653381 (+) True G3647
TU6436 other downstream 803989 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 1395347 20112442 ~ 20112514 (+) True trnak-cuu
TU7127 other downstream 2604370 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 2873782 21590877 ~ 21620580 (+) False rnf24
TU7172 other downstream 2915120 21632215 ~ 21635052 (+) True G5037

Expression Profile