RNA id: TU6217


Basic Information

Item Value
RNA id TU6217
length 285
lncRNA type inter_gene
GC content 0.24
exon number 1
gene id G4356
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18714947 ~ 18715231 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGCATAGGTCAcctttaaaacctttttctaCTTGATTTAACCCATTAAAGTTAGTTTTGTTGATATAAGatattatatcaatattttagacaagaataaaaacaattaatatcagtgttcatttaaagtattttgtaaCAACTTTATTAgcatctttgttttaaaaaagtattaatttcacaaattatatatttgaagcAAATGTTAGACTATTCAATCTCTTGGAGAAATTGTTATCCTGCAAACATTaccataaaagctttttttcatatCTGATTTAATC

Function

GO:

id name namespace
GO:0004852 uroporphyrinogen-III synthase activity molecular_function
GO:0016835 carbon-oxygen lyase activity molecular_function
GO:0016836 hydro-lyase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6197 lncRNA upstream 6518 18706209 ~ 18708429 (+) True G4345
TU6214 lncRNA upstream 20374 18694183 ~ 18694573 (+) False LOC122340556
TU6182 lncRNA upstream 115288 18598356 ~ 18599659 (+) True G4331
TU6140 lncRNA upstream 403606 18309934 ~ 18311341 (+) True G4296
TU5942 lncRNA upstream 499863 18213305 ~ 18215084 (+) True G4166
TU6219 lncRNA downstream 1643 18716874 ~ 18717095 (+) False LOC122340556
TU6221 lncRNA downstream 7844 18723075 ~ 18723295 (+) True G4360
TU6222 lncRNA downstream 32003 18747234 ~ 18747753 (+) True G4361
XR_006248576.1 lncRNA downstream 278530 18993761 ~ 19176827 (+) True LOC122333031
TU6439 lncRNA downstream 809315 19524546 ~ 19524780 (+) True G4531
XM_043233897.1 mRNA upstream 21559 18687317 ~ 18693388 (+) True cep44
XM_043233886.1 mRNA upstream 21559 18687782 ~ 18693388 (+) False cep44
XM_043233907.1 mRNA upstream 21559 18687817 ~ 18693388 (+) False cep44
XM_043233850.1 mRNA upstream 117310 18584156 ~ 18597637 (+) True galnt7
XM_043233820.1 mRNA downstream 124719 18839950 ~ 18858945 (+) False wdr17
XM_043233828.1 mRNA downstream 124759 18839990 ~ 18858945 (+) True wdr17
XM_043233802.1 mRNA downstream 128959 18844190 ~ 18858945 (+) False wdr17
XM_043233805.1 mRNA downstream 128960 18844191 ~ 18858945 (+) False wdr17
XM_043234072.1 mRNA downstream 153451 18868682 ~ 18872848 (+) True spcs3
unassigned_transcript_101 other upstream 136116 18578750 ~ 18578831 (+) True trnas-aga
XR_006251260.1 other upstream 432186 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other upstream 432186 18247252 ~ 18282761 (+) False dclk2a
XR_006251846.1 other upstream 1106106 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 3061566 15653093 ~ 15653381 (+) True G3647
TU6436 other downstream 805853 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 1397211 20112442 ~ 20112514 (+) True trnak-cuu
TU7127 other downstream 2606234 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 2875646 21590877 ~ 21620580 (+) False rnf24
TU7172 other downstream 2916984 21632215 ~ 21635052 (+) True G5037

Expression Profile