RNA id: TU6564


Basic Information

Item Value
RNA id TU6564
length 2551
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G4609
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19598210 ~ 19809631 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAGTTTCAGAtaaaaatttcttttttattcaaatgaagtGAACAAATACAATGAATCATTTCTGTTAAAATATCTCCCTCTGTCTTTGCTCCTCCGTTTCATCTCTTCCTCGATAGCTCTCTCAGCCCTTTCAAGCATCTCACTGGTGTAGTATTGACCTCTATTTCCAGTGACCATTTCTCATTCACCAGAAGGTAAATATGCACTTGAATATTATCTATTAATAACTTAACTATTTAACTTTAGACATAAACTATTGAGATTTGAAGTACTTTCTTCATTTCAATTAGTTTTTCAGTCACAACACTCAGTTTTCACATCAGAAGGTTTGCTTAATGCTTTAAGCAAAGAACTGGCCCCTTTGGATTAAGAACGTATTATTCTTAGCTTGGTATCTTGCCAGCTggtcatttattattgtttaatttttttaatgctttttcatAGGCCTCATCCTGAAGTTGAGCCCTCAGAGCTTCtatctctctccgtctctgctCCTCCGTCTCCTTCAAGATACGTTTCTTCTCTTCCTCGATCGCTCTCTCTACCCTTTCAAGCATCTCACTGGTGTAGTACTGTCCTCCATTTCCAGTGACCATTTTATCAATCTGGTCCAGCAGCTGATTGACCTGTTCAGGGTTTTGTTCTTTATTGTTGAACACATGGTATCGTCCGCTGCATGCTTTGATGAAACTGAGCAGTTTTGGGTTGTCCCGCACaaatgtgtgaatgtttttgccCTCCAGTCGATCTCCATGAGTGAACAGAGCCATGATGTAAGCAGAGGATTCCTCACCAAAAACAGCTTGAATGATCCTTACAGCTTCTGCCTCTTCATCTGTGAATCTGCCCAGCTGAATCACAACCAAGAAGACATGTGGACCAGGAGCAGAGAGAGGGATGCAGAGTTTAATTCTCTTGACCACTTCCTCTGTAGTTAAGCTGGTGTCAAACAGACCTGGAGAGTCAATGACGGACACTTTTCTGCCGTTTATTATTGCgtcttttttttcacactcCCCAGTCACAGAAGAGGACGATATCtctgatttaaaatgcttttttttcacactccCCAGTCACAGAAGAGGACGATATCtctgatttaaaatgcttttttcccaGGATAGTGTTGCCTGTTGCACTTTTTCCCACTCCTGTTTTTCCAACCAAAAGAATCCGAAGTGGATCGCCTGGATGATGCACTGAACATTAACAAAAATCACATAATTTTTAACTCTtggtaatataaatacatatacaaacatctatttaaaagaacaatgaaatatacctatatttatatactgtaatacTAACATCCACCGTTGAgttgtaaaattaatatatagaaatataacaaataaataacttacCTACATCATCCAAATCTTGTTTTTGTGGATTGAAGATCTAGAAATTATTTATACGTTACAAATTTGATCACATTTGGCAacttttactgttaaaaagaCAGTCAGCTTAGAGTGGAAAAGTGACAAAATGCAGGCTTACTccacattaaaatgaaagttttgtcTTTAATCATTTACCCCCATGTCGCTCCAAACCcaaaaaagctttgttcttcttcggaacacaatttaagatatacggtatatataacatttacGGTATATATTTACGATATATAAAATGGTTACATCCTGACtggtaattgtttggcagtcagtgggttaagtgattaatgacaaaaaaaaaatgtaactggggtggagtaaccctttaagcatACCTGAATCCCCAATGCAATAGCCAGGACAATTATACAAAGCATCTGTAGTTCTAGGGGGAAGAACACATCCCAAAACTTTGTGGTCGTTGTTGATGGTCCAGAAGTCTCCTGCACAGCTAAAAAAAGCccccacatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtattttttagctaacttttttttattatttaatacatatagtCTCGTTTCATGTCACAGTTTTAGGCAAAAGTAACTTTACATTTTAGCCTACACTTTTTATGATTTCTACTTTATCTTCTATTACAACAGTTTCGTTTAGTAACTTACTGCTATGCTTTAAATCAGGTTTCACTTGTCTGTAAAGCATTGCTGTCTCATTAAATTCGTCAAAAGGCggtaaattgtttttgttttttggttttttcagGAAACCGATTTCGTCTTTTCAATTAGGGTGACCACGCGTGCCATTTTCTTCGGACGCGTCCTTGCCGAGATTTCTACCTCAAGAGCGCTTTGAAAACATAAGGAATCGGTCTGAaggcaaacaaagccaaaacctacaTATTTTAGCATAGTATAATATAGGAATGCTGTCCATGACGCGTCCAGGAAAAATTGGCTCAAATGGTCATCCGGTTTTTCAATGCAGACAATTGGtataaaccattttaaagatACAACTCACCTTTAATTGAAGAGCACATCGTGCGTGTATAGAAGTAGACTGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6551 lncRNA downstream 17349 19579564 ~ 19580861 (-) True G4607
TU6537 lncRNA downstream 45064 19552628 ~ 19553146 (-) True G4600
TU6534 lncRNA downstream 53850 19542976 ~ 19544360 (-) True G4597
TU6533 lncRNA downstream 56860 19540584 ~ 19541350 (-) True G4596
TU6525 lncRNA downstream 68959 19528751 ~ 19529251 (-) True G4590
TU6568 lncRNA upstream 5182 19608383 ~ 19611515 (-) True G4611
TU6569 lncRNA upstream 5182 19608383 ~ 19611515 (-) False G4611
TU6573 lncRNA upstream 27897 19631098 ~ 19632253 (-) True G4615
TU6634 lncRNA upstream 333189 19936390 ~ 19936759 (-) True G4671
TU6683 lncRNA upstream 334818 19938019 ~ 19938401 (-) True G4713
XM_043244182.1 mRNA downstream 1208 19589806 ~ 19597002 (-) False zfp91
XM_043244175.1 mRNA downstream 1208 19589806 ~ 19597002 (-) False zfp91
XM_043244165.1 mRNA downstream 1208 19589806 ~ 19597002 (-) False zfp91
XM_043244156.1 mRNA downstream 1208 19589806 ~ 19597002 (-) False zfp91
XM_043244149.1 mRNA downstream 1208 19589806 ~ 19597002 (-) False zfp91
XM_043251230.1 mRNA upstream 8628 19611829 ~ 19624241 (-) True tesk1a
XM_043251226.1 mRNA upstream 61896 19665097 ~ 19757356 (-) True maml3
XM_043251231.1 mRNA upstream 173890 19777091 ~ 19785647 (-) True clgn
XM_043248486.1 mRNA upstream 274990 19878191 ~ 19879651 (-) True hmx4
XM_043249777.1 mRNA upstream 277924 19881125 ~ 19882724 (-) True hmx1
TU6528 other downstream 59064 19535972 ~ 19539146 (-) True cdk2ap2
XR_006250498.1 other downstream 1717793 17815824 ~ 17880417 (-) False znf827
XR_006251556.1 other downstream 3524290 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 4367324 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 4568590 15020642 ~ 15029620 (-) True G3515
unassigned_transcript_102 other upstream 493754 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 509549 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 509941 20113142 ~ 20113213 (-) True trnae-cuc_4
TU6776 other upstream 533871 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU6779 other upstream 533871 20137072 ~ 20139930 (-) False si:dkey-9i23.16

Expression Profile