RNA id: TU6565


Basic Information

Item Value
RNA id TU6565
length 3896
lncRNA type read_through
GC content 0.37
exon number 2
gene id G4609
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19598210 ~ 19809631 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttaaggtttattaAGGTGTATTACCTTCAATAATACAACAACTGAATATTCACATTGAGCTATCTGTCAGAACATTGGCCAGTTGCGTCTGCCTCTTCTCTCCATAGCGGTTTAATAACAAAGTCAGTTCATTTGTTGATCTTAAGGTAACGTAGCATAGAAAGGGATACAAAAGGGAGAAATTACTCCACCCAGAGGCCAACATTGCACTGCAAATGACTGATCATTTAGATGGCAAATAAATACCTGGTAAACAAAggataaattattttgtatagaGATGAAAAAGCCTTACACAAAACACAGCATGATATTTTTTGCATCATATACCTATAATAATACCCAGCTATTTATTGACATATTGCTCAAGACTTACTCAACTTTTATCAGGGCCATAAGGAGGTCCTAAAGTGCAGATAGTGGGTTTGAGGGCATACTCCGCCAAGAAAGCTTGATTTTCCTGATTTACATgcgtgcattttaaaatagattatgaATGGGATAATAAGAAAAGTTTCAAACTGCGTATATTGTGTCCTCAACCTACAATGAATGTTTTCATGTTGCTCACTAAACAGTGGTGAggtttgatttctttttattagcaaaatagagcaaaaacaggACATTTGGTGTCTAAAACATAAGTCTCTCAATTAACTTTTGTTTATTGAGTTGTTGTATAAAATCTATATCACTTTTGtaatcaaacatttttagagaaaaatggcACTCTTTGTGTCATATTGATTAACTatataaagtgttataaatatttaacttttttgtccCCATGTCTTGAATTTAtgattattcaaatgtattttaatagacTGAATTTAGaagaacacactcacactaGTCTTGAATTCGCATACAGCACACATAAATTGGGCCGATGTCAACTACATGGAAAATGTTGAAAAGGTTACCTTTAACGGCCAAAACCAGATTGGAATCctatagggtttttttttgatAGGATAAAACgttattatactgtacaaataatACTGTAGGCTTTGAATGGGATCCAATTGCCCAGCAAGCATGTCTTTGGCTGTTAAGCGCACTTAGTTCTGAACCCCATACATAGACAGTCAACATTAATTGCACTTTTTAATTCACACTCATACAAGAAAATGATGCCTAATTTGATCTGCAACattcaaagacagaaagaaagacagaaagaaagaaagaaaaatgttgatatGCAGCTAGGCTACAACAATCTGAGTATTATCAGACTATAAAGACTAGgtatacactctcagaaataaagatacaaaagctgtcattgggtaggtacatttttaaaaaggtacatgtttgtattaGTACTTAAATTGTATGCCTAAAGGTACAAAAGGtgtgtagtttttaaaaaggtatacCACACCAGTGACGgctatttctgagagtgtatagGGTACAGTGGGGGAAATCGCCTCCCTACAGTTTTTCccaaaataactatttaataaagtcaagacaatttttcttttgtaactATGGACATTGTTTACTAGAGTGATATAGAAATGTTCAGCATGAAGCTTGCGCTGGTGACGTACCTGAGAGAAAACGGATTTTGAAGAAtctaaaaactgcatgtttgcaTGGAAATTTTTTCAACCTTTCTTCACAATATAAGTGGCTTTTTAAGAAGATACTTTTATATGGGATATAATTTGAACTGACATCCGAAAATGTTCAACTAAAAAATCTGAAGACtctttttacaatattgctgaCAAATTGTGCTATATGATCAAAAATTGAACTGCTTCTCTCAGCCTTCCATCTTGCCTGCTGCTCATGACGTTTATTCAGTTCTTCTCGTTCAAGCTCTGACTTCAGAGCTTCtatctctctccgtctctgctCCTCTGTCTCCTTCAAGATACGTTTCATCTCTTCCTCGATCGCTCTCTCAGCCCTTTCAAGCATCTCACTGGTGTAGTATTGTCCTCCATTTCCAGTGACCATTTTATCAATCTGGTCCAGCAGCTGATTGACCTGTTCAGGgttttgttctttattattgAACACATGGTATCGTCCGCTGCATGCTTTGATGAAACTGAGCAGTTCTGGGTTGTCCCGCACaaatgtgtgaatgtttttgccCTCCAGTCGATCTCCATGAGTGAACAGAGCCATGATGTAAGCAGAGGATTCCTCACCAAAAACAGCTTGAATGATCCTTACAGCTTCTGCCTCTTCATCTGTGAATCTGCCCAGCTGAATCACAACCAAGAAGACATGTGGACCAGGAGCAGAGAGAGGGATGCAGAGTTTAATTCTCTTGACCACTTCATCTGTAGTTAAGCTGGTGTCAAACAGACCTGGAGAGTCAATGACGGACACTTTTCTGCCGTTTATTATTGCATGAttttttttcacactccCCAGTCACAGAAGAGGACGATATCtctgatttaaaatgcttttttcccaGGATAGTGTTGCCTGTTGCACTTTTTCCCACTCCTGTTTTTCCAACCAAAAGAATCCGAAGTGGATCGCCTGGATGATGCACTGAACATTAACAAAAATCACATAATTTTTAACTCTtggtaatataaatacatatacaaacatctatttaaaagaacaatgaaatatacctatatttatatactgtaatacTAACATCCACCGTTGAgttgtaaaattaatatatagaaatataacaaataaataacttacCTACATCATCCAAATCTTGTTTTTGTGGATTGAAGATCTAGAAATTATTTATACGTTACAAATTTGATCACATTTGGCAacttttactgttaaaaagaCAGTCAGCTTAGAGTGGAAAAGTGACAAAATGCAGGCTTACTccacattaaaatgaaagttttgtcTTTAATCATTTACCCCCATGTCGCTCCAAACCcaaaaaagctttgttcttcttcggaacacaatttaagatatacggtatatataacatttacGGTATATATTTACGATATATAAAATGGTTACATCCTGACtggtaattgtttggcagtcagtgggttaagtgattaatgacaaaaaaaaaatgtaactggggtggagtaaccctttaagcatACCTGAATCCCCAATGCAATAGCCAGGACAATTATACAAAGCATCTGTAGTTCTAGGGGGAAGAACACATCCCAAAACTTTGTGGTCGTTGTTGATGGTCCAGAAGTCTCCTGCACAGCTAAAAAAAGCccccacatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtattttttagctaacttttttttattatttaatacatatagtCTCGTTTCATGTCACAGTTTTAGGCAAAAGTAACTTTACATTTTAGCCTACACTTTTTATGATTTCTACTTTATCTTCTATTACAACAGTTTCGTTTAGTAACTTACTGCTATGCTTTAAATCAGGTTTCACTTGTCTGTAAAGCATTGCTGTCTCATTAAATTCGTCAAAAGGCggtaaattgtttttgttttttggttttttcagGAAACCGATTTCGTCTTTTCAATTAGGGTGACCACGCGTGCCATTTTCTTCGGACGCGTCCTTGCCGAGATTTCTACCTCAAGAGCGCTTTGAAAACATAAGGAATCGGTCTGAaggcaaacaaagccaaaacctacaTATTTTAGCATAGTATAATATAGGAATGCTGTCCATGACGCGTCCAGGAAAAATTGGCTCAAATGGTCATCCGGTTTTTCAATGCAGACAATTGGtataaaccattttaaagatACAACTCACCTTTAATTGAAGAGCACATCGTGCGTGTATAGAAGTAGACTGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6551 lncRNA downstream 17349 19579564 ~ 19580861 (-) True G4607
TU6537 lncRNA downstream 45064 19552628 ~ 19553146 (-) True G4600
TU6534 lncRNA downstream 53850 19542976 ~ 19544360 (-) True G4597
TU6533 lncRNA downstream 56860 19540584 ~ 19541350 (-) True G4596
TU6525 lncRNA downstream 68959 19528751 ~ 19529251 (-) True G4590
TU6634 lncRNA upstream 126759 19936390 ~ 19936759 (-) True G4671
TU6683 lncRNA upstream 128388 19938019 ~ 19938401 (-) True G4713
TU6780 lncRNA upstream 327441 20137072 ~ 20139930 (-) True si:dkey-9i23.16
XR_006250988.1 lncRNA upstream 346033 20155664 ~ 20157523 (-) True LOC122345298
TU6910 lncRNA upstream 390364 20199995 ~ 20265069 (-) True G4870
XM_043244175.1 mRNA downstream 1208 19589806 ~ 19597002 (-) False zfp91
XM_043248486.1 mRNA upstream 68560 19878191 ~ 19879651 (-) True hmx4
XM_043249777.1 mRNA upstream 71494 19881125 ~ 19882724 (-) True hmx1
XM_043245252.1 mRNA upstream 102049 19911680 ~ 19916332 (-) True adra2c
XM_043246091.1 mRNA upstream 157236 19966867 ~ 19984961 (-) True dok7b
XM_043246100.1 mRNA upstream 159228 19968859 ~ 19984964 (-) False dok7b
TU6528 other downstream 59064 19535972 ~ 19539146 (-) True cdk2ap2
XR_006250498.1 other downstream 1717793 17815824 ~ 17880417 (-) False znf827
XR_006251556.1 other downstream 3524290 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 4367324 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 4568590 15020642 ~ 15029620 (-) True G3515
unassigned_transcript_102 other upstream 287324 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 303119 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 303511 20113142 ~ 20113213 (-) True trnae-cuc_4
TU6776 other upstream 327441 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU6779 other upstream 327441 20137072 ~ 20139930 (-) False si:dkey-9i23.16

Expression Profile