RNA id: TU6569


Basic Information

Item Value
RNA id TU6569
length 2640
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G4611
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19608383 ~ 19611515 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttatttattaaagcctACTTATTATCTCAACTCAACATCAAACAGTAGCTTAGCAAAACTACAAATATCTCTTTGATAATTAGCCGATTAAAGAACTGCACTTGGGAGAAGTTAAAGaagtaatattttgtataacttATGCATGTGTTAGAACAGAAATTACAATTAACACTGAAgatttaatgcaataataaacatttagtcTTATAAGAAAGGcagtataatataatttcatatatatatatatacatgaaagtacaaaacaatcaaagaaacaaaggtggcattaaaataaaataaaaaaGTAACCATCTTGATTAAATTTGCAGCCTTCATTCACAATATGTAGTGCAATTTCTCTCAGGTCAAGCATCTATTGCTGCATTTTGAGGCTATTCTGTAAAAATACCTCTGACCCTTTGGTCTGCTTTGTTCTGTGTATCTTTCCAGAATTTCCTGCAAGGTTTACAACATGTGCCACGCGACCTATCTGTGACCCCAGTCAGATTTCATTCACTTCATCTATGGTTACTGGGAGTAACACGTTTGGCTTTCCCACCGTCCACATATTGACTGCATCTGTCAGCTCTTTTGACAAACGAGCGCTTGTGTGACTTTCATACAGGGGATGGCTTTGGACGATGCACTCTTAATTTCCCAATCTGACAATGTAATAAAGagtaacaacaataaaaatctatCCACAATATCCAACTATGTGCAGGCAGAGTAAAGCTTTTTGCTTTAGCCAGTTCATCTATAATACCGTTGCATGTCTTTTCAAAGAGGCTGTAATTACCTCTGTAATTACACAGTAGTATATAATCTCTTCTCTGCCGTCTTGATTTTAGTAGGTATTGTAAAAAAGTGCttgtaaaaagtcatttttatggCATTGCATTCAACCGCTAAACCAAAATGCCCCCCAcaccacagattaaaaaaaacgtttggctcttgttttaaatataaaaatactaacaGGCAAGTACCAAAACTTATCATATAAAAGTGCAACTGtatttttcaggttttagtGACCAGAAAATGGCGGCCAGTGCACAACGTCCAATTAGATTCTCAGCAGCTTGGAATGCTGCTGTCGTCTTTAAAACACATCGACAACAATAAGAAAGAGGCAGGGGCTTGTGTACCTAGTGCAATCGCGGGGGTTTTCCGTATGAAATTTCAATAGGACCACTTTGGGGTTGGGATGCCACTTTGGTGCACTACTGACACTGAGCTCTGGAAGAAGTACATCGGTGGAATCACTTCCTTAAGATAGCTATATCCTCTTCAGCTAACTGTCTCTTTAAAGCCCATAATTCTATATCTTTGTTTAAGTTCTTATTTAACTTACTCAACTTTTTATCAGAAATCTTAGAATAATTTTCAGGAAGGCAATTAATGGTGCTTGCACCAGAACGAACAAAGAGGcactttgtcttgttttccttcTTGTTTAACGTAGTGTGAAAACGTTTCTTCTGAGTTAATTTATACTTCGGGACAACGTCAATCTCAATAACCCACCTCTCCTCGTTATTTGGACAATTAACTTTAACAAACTTGGGGGGCCTGATGCACGCCATTGCAAGTACACTTTTCTCTCTGAAGTGTTCCTTCAGACCCTTATCAAATGCGTCTACATATTTATCCCGACGTGGCACCTCTAGTCCAATAATTTGTCCGTGTTTGTGCAGTGGTTCATCTCCAACACCGAAATGGATAGTTCCGTTAGATCGAGAATTAATGCATGCTGCACAAAACCAGAATGCttcatttttgaatttttttaagacattctCTTCTAAAGCATCTTGTGTGTTTGCCAAGAGCTTGTACTCATGTATAGGATCGATAAGATTGCTTGGGCCAGTCTCAATTGGAAGTATGTCGTTTTGTGTGTATTCAAATGTTTCACTGCTTTTATCAAAAGGGCGGGGAGCACAGTAACGAAACTTCTCACCGGTCACCTGTTCTTTGGTCTCACTCTCTACAATATTTGTTTGCGCTGCGCATTGCATCAAAGGCTGTGCGCTACTTGCCTCATCTGCTTTGGCATACATGCTGCTATACTGTTCCTCCAACCGTACAGCATTTTCATCTTGAAAGTGTGAAGCATTGCCTGTACATCTGGGTACGTCTTCTGAGGCCCTTGACCATATCTCCACGCTTGATGTGTCACTGTTTTCTTCTATGCTGATTTGATCAAGCTGCTTATCAGACCAAGAGGTATGGCTTTCAGCCCGTCCTGTTTCTTGTTGAAACTGGTGTGCTGCAGAGGTCCCTATTAATGCATCCGCGTCTTTGGTTGTGGCATGGTAGGATGTTTTTAACTTGGCCACTATTTTAGTGATGTGAACTGCAGGTCCCTGTGATAAACCAATGTCTAGGAGGTCTTGTTTGTCAAAATGAATTAGTGAGGCTCCATAAACTTCGTTATTGTAAAGAATCTTAGCAACCTGTACGGGGACATTGTTCTCGCTTAGCCACTGGTAGACATCAGTTCTATTCCAGTGATCTATGCAATAATTCAGGTTTGCCTTGCCTGATGTCCTGTTGTGTTCCACATGGCTATTCCCCTGGTTTTCTTCAATGCTGATTTGTGCAGGCAGCTCCATTTCAGCAGATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6564 lncRNA downstream 5182 19598210 ~ 19603201 (-) False G4609
TU6555 lncRNA downstream 5182 19599556 ~ 19603201 (-) False G4609
TU6551 lncRNA downstream 27522 19579564 ~ 19580861 (-) True G4607
TU6537 lncRNA downstream 55237 19552628 ~ 19553146 (-) True G4600
TU6534 lncRNA downstream 64023 19542976 ~ 19544360 (-) True G4597
TU6573 lncRNA upstream 19583 19631098 ~ 19632253 (-) True G4615
TU6634 lncRNA upstream 324875 19936390 ~ 19936759 (-) True G4671
TU6683 lncRNA upstream 326504 19938019 ~ 19938401 (-) True G4713
TU6780 lncRNA upstream 525557 20137072 ~ 20139930 (-) True si:dkey-9i23.16
XR_006250988.1 lncRNA upstream 544149 20155664 ~ 20157523 (-) True LOC122345298
XM_043244175.1 mRNA downstream 11381 19589806 ~ 19597002 (-) False zfp91
XM_043251230.1 mRNA upstream 314 19611829 ~ 19624241 (-) True tesk1a
XM_043251226.1 mRNA upstream 53582 19665097 ~ 19757356 (-) True maml3
XM_043251231.1 mRNA upstream 165576 19777091 ~ 19785647 (-) True clgn
XM_043248486.1 mRNA upstream 266676 19878191 ~ 19879651 (-) True hmx4
XM_043249777.1 mRNA upstream 269610 19881125 ~ 19882724 (-) True hmx1
TU6528 other downstream 69237 19535972 ~ 19539146 (-) True cdk2ap2
XR_006250498.1 other downstream 1727966 17815824 ~ 17880417 (-) False znf827
XR_006251556.1 other downstream 3534463 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 4377497 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 4578763 15020642 ~ 15029620 (-) True G3515
unassigned_transcript_102 other upstream 485440 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 501235 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 501627 20113142 ~ 20113213 (-) True trnae-cuc_4
TU6776 other upstream 525557 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU6779 other upstream 525557 20137072 ~ 20139930 (-) False si:dkey-9i23.16

Expression Profile