RNA id: TU6776


Basic Information

Item Value
RNA id TU6776
length 1665
RNA type TUCP
GC content 0.38
exon number 6
gene id si:dkey-9i23.16
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20137035 ~ 20140579 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGACTCACCCCGAATATTTTGGGCTCCCCCTTCTCGATGCTTTCCCTCAGagctttttgtttgtcttcCAGTTTTTCCTCTACCTGAGTTGGGCTAGTGTTCACTGAGAGGTCCGTCGACACAGTCAAAGTCATCCTTCGATCACAAGTGAGTTTGCAATAACAAATGCGACTTTGAAGAACGCAGCAGAGTAATGTCAGATACTTTCAAGAAGTACAATAAACGcggagctttaaaaaaaaaagtcttcacgTTATTTATTGTCTGCTGGCTTAACCTGCTCGTGCTGATTGAATGAATCTCCAAGTGCGCAACAATTCTACAGAAAAGACGCGGGCATCGGTTTTctctacaaaaacatttagaccCACCCTTGCGTTTTTATGCAGGCATCACAAAGAAAGGGGGTCTGTCCAGCCCCCTTCTCCCCACATGAGGTTTTATTCAGGGTCTTCGATCACTTCATAAACATCTCCGTTCTTCTCATCCACGAGCTTTCTAGGATTCCCAACAACGACGTCGAGTTGAGTTTTAGCTGGGTTTTTAAGATGTCAAGCAACCAGACTCCATCTGCTGACTCGGATCCTCCCAAATTCCATCGCCTGTTCAAGTTTTATGACCCTGAAGTGGTGGCAGTAAGTGGATGTGGGGCAAATAGTTTGACATTAAGGAAGATAGATAATGCTCATGGCAATATTATTAGGCTTGATCCAGCTCCTCCTGACCGCACCAACCTACAACATCAGCCTTGATAtaaattttttgtatatttgccCCCTCTGTGTTGGTTCTGTGTCTGTCATTGCTGGATCGTTTGGTATGGCATCTGAAAGAACACCCAAGAGAGATCTGTTAAAGTACTGTCTGATCTGTGGTCTTGCTGGCCTGGTGGGGACACTGATTGGACTTGTTCTGTATAGTTATGCTGCAAGTACCTCTCTGAACATCCCTTCCTGCTCATCTGAATACAGTGAAAACTCAACTTGTCCAGATATAATCTTTCAAAGTTTATACAAAGCCATCTCTGGGCAGCTGgtgttttataatattgcaaCTCTGGTTATTCattgttttctattgttttctgcatttaaagGACTGAGGAAACATTGAGATGACATTTTCCATACACCACACACTTCTCTTTTAGGCACAGATTTTTTATGAGCATCTAATCCTTTATATTGTGATTAATATTTTGCCTCCATTTCATCACTGTTATTGAtattctgtcattgttttctcttcttcttgtTATGTGAATTTACAATATTGTCACGTAGTGCAAAAAATACAGATCTGAAAGTCTTTGTGAAACtggaattatataaaaaaaaacttactatacactgaaaacatttaacCAACTATTAGCCTACTGAAAATGTAagtttatactttaaaataaaaaaataaaaataaaaataaaacaatgtggTACCAAAATTACAACATTGATGGTATTTTTGACCACTTTGTTTCAGTAGCAGTGAAATCATTGCTAATGAAACGATCAGTGAAACTctgaaaactattaaaatcacaagttgccgtgtcaaataaaatgagtataatcaaatgtgtaaaacaattatgaaaacacagctttacagtgctaaaataatgtatttttagtgcTTATATCTGTAAATGTGTGAGACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6683 lncRNA downstream 198671 19938019 ~ 19938401 (-) True G4713
TU6634 lncRNA downstream 200313 19936390 ~ 19936759 (-) True G4671
TU6573 lncRNA downstream 504819 19631098 ~ 19632253 (-) True G4615
TU6568 lncRNA downstream 525557 19608383 ~ 19611515 (-) True G4611
XR_006250988.1 lncRNA upstream 15734 20155664 ~ 20157523 (-) True LOC122345298
TU6910 lncRNA upstream 60065 20199995 ~ 20265069 (-) True G4870
XR_006250990.1 lncRNA upstream 125355 20265285 ~ 20266183 (-) True LOC122345304
TU6996 lncRNA upstream 303022 20442952 ~ 20444794 (-) True G4924
TU7018 lncRNA upstream 319611 20459541 ~ 20460184 (-) True G4930
XM_043238975.1 mRNA downstream 521 20130165 ~ 20136551 (-) True vps37c
XM_043239028.1 mRNA downstream 8388 20123390 ~ 20128684 (-) True LOC122345161
XM_043239288.1 mRNA downstream 16628 20113304 ~ 20120444 (-) True tmem132a
XM_043235665.1 mRNA downstream 72917 20033982 ~ 20064155 (-) True htt
XM_043235691.1 mRNA downstream 72918 20033982 ~ 20064154 (-) False htt
XM_043238952.1 mRNA upstream 8611 20148541 ~ 20153883 (-) True wu:fc21g02
XM_043238947.1 mRNA upstream 8611 20148541 ~ 20153882 (-) False wu:fc21g02
XM_043238447.1 mRNA upstream 33931 20173861 ~ 20190297 (-) True kdm2aa
XM_043239057.1 mRNA upstream 51951 20191881 ~ 20195323 (-) False zgc:165520
XM_043239074.1 mRNA upstream 51951 20191881 ~ 20195323 (-) False zgc:165520
unassigned_transcript_105 other downstream 23859 20113142 ~ 20113213 (-) True trnae-cuc_4
unassigned_transcript_104 other downstream 24251 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_102 other downstream 40046 20096955 ~ 20097026 (-) True trnae-cuc_3
TU6528 other downstream 597926 19535972 ~ 19539146 (-) True cdk2ap2
XR_006250498.1 other downstream 2256655 17815824 ~ 17880417 (-) False znf827
XR_006250953.1 other upstream 150943 20290873 ~ 20312948 (-) False zdhhc5a
TU6966 other upstream 227209 20367139 ~ 20369094 (-) False timm10
TU7069 other upstream 543912 20683842 ~ 20686740 (-) True G4958
TU7255 other upstream 1578209 21718139 ~ 21723065 (-) False G5104
TU7256 other upstream 1579170 21719100 ~ 21723065 (-) False G5104

Expression Profile