RNA id: TU7069


Basic Information

Item Value
RNA id TU7069
length 1479
RNA type TUCP
GC content 0.45
exon number 2
gene id G4958
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20683842 ~ 20686740 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCAACCATCGAGCTCACATTTCCCATTTGACATGTTACTGAAATTTCTTGAGTAATAGCAATCAGAAAGGTTCCACATACAGATTTCGCTCAAGTTTGAGTTAGTCACATGAATTTGCCATGCTGACCAAACTGTGTGTTGTAATTACTAtatcatcaacaacaaaaagaaattgcTCATACCAAGTAGTGGAGGTAAAGGGGGCATGTTCGGAAAGCGtatgagtccaaacagctttCCTCCAGCcacagaacaaataaacaaggTCACGATGCCAAAGAGGTTTCCGCCAGGAAGACATTCCTTCTCTGTAATGGACCATACAACCCCAAAGAGCACTGCGGCCATGGACACTACAAAggggacaaaaacaaacagtgtaTGCGCAATCTCCATCATCATGTTTATGAAGATTATTGACCCTTTTCTTACCTTTGGTGATAATGGTGGCCAGCAGGCCTCTGGGTGGACACGGGCACAGTCTGCGCAGCCATGGGCAGCATTCGTAGGGAGGGTCTGTGTTAGTGCAAGCGTCAACTGAAGACACCGGTCGAGGGACATAAGTAGTCTCTTCTGTCATACTCGGATTGGGGCTCTCTGAGCGCTTCGGAACCACCAGCACTGTCTGACTGACGCGGAGGCTGCATCCTCGGTCCTCTGTGAGTATGTGGAGTGGGCTGAATGGGGTCTGGACTGGGCATCCTCCATGACACTGTACTTCTGCTCTATCCTCGCTCGAGTCTTCTAGCCATTGCACGTGTTCATGACCGGCTCCTGTTTATCAACACTCATCTGTGTAAATATAAGTGGTCGTTACAGCGTCTGCCCATCGACGAAGACTTAGCTGTTCTCAATGAGCTTCGAAGAAGAAATAGCATGAGTACTAGAAAAGAAACCGACTGGTTTATTCACCAGGTTAATCGGATTGTGACAGGACTGAACGCGACGCCTGGGCCATATGGTGCTTTATCGGGCTGAAGAGGGCATGGCATATGGTCTCTGTTTGTAAGACCGTAGTAAACCACTCACTGAATAATATGTTTGACACCAGTGTCCCGAGACCAGGTATTCCTATTTACAGCATCTTCAACTGTCTTCTGTAGTCTAAAATTAATCTCCTTTCTCGTTTCATGACTGTTGCAATCCTGTTGTTTCGCGCGATAAAGACGTCGTTCTTTCTCTGTGACGCTTAATATTTGTTATGGTAATTATGGTCATTATGGTCAATTAcatgacatgaaaaaataaaaacaaccatggcaatcaaatcaaatctcaTGCGGAAGTATCTGTAACTTTGACCATCTGTAAGGTATTGACCAACATGTGCTAATGTCTACAcgtataaaaacaaataacactaaaaatatACGCGCTTGATCTCGGAACGCGCGGAtagatttttaaagattaatctTTTACCCGGTAAAGGCATCCGGAAATGTGAGTGACAGCTGGAAGGTGGCTTAACCGTAAG

Function

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0003923 GPI-anchor transamidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7025 lncRNA downstream 214827 20466162 ~ 20469015 (-) True G4934
TU7018 lncRNA downstream 223658 20459541 ~ 20460184 (-) True G4930
TU6996 lncRNA downstream 239048 20442952 ~ 20444794 (-) True G4924
XR_006250990.1 lncRNA downstream 417659 20265285 ~ 20266183 (-) True LOC122345304
TU6910 lncRNA downstream 418773 20199995 ~ 20265069 (-) True G4870
TU7087 lncRNA upstream 16736 20703476 ~ 20711454 (-) False LOC122349798
XR_006251499.1 lncRNA upstream 24490 20711230 ~ 20718873 (-) True LOC122349798
TU7094 lncRNA upstream 31492 20718232 ~ 20718890 (-) False LOC122349798
TU7131 lncRNA upstream 219430 20906170 ~ 21410571 (-) False ctnna2
TU7205 lncRNA upstream 863612 21550352 ~ 21551235 (-) False si:dkey-37g12.1
XM_043238579.1 mRNA downstream 233723 20445132 ~ 20450119 (-) True LOC122344926
XM_043238938.1 mRNA downstream 249471 20430808 ~ 20434371 (-) True LOC122345104
XM_043239088.1 mRNA downstream 256031 20413591 ~ 20427811 (-) False cabp2a
XM_043239097.1 mRNA downstream 256846 20413591 ~ 20426996 (-) False cabp2a
XM_043239101.1 mRNA downstream 263412 20413591 ~ 20420430 (-) True cabp2a
XM_043242532.1 mRNA upstream 6525 20693265 ~ 20695767 (-) True cisd2
XM_043243368.1 mRNA upstream 241552 20928292 ~ 21264688 (-) True ctnna2
XM_043246136.1 mRNA upstream 694961 21381701 ~ 21384924 (-) True LOC122349971
XM_043244768.1 mRNA upstream 725123 21411863 ~ 21415844 (-) True LOC122348874
XM_043236036.1 mRNA upstream 853026 21539766 ~ 21548066 (-) False LOC122342190
TU6966 other downstream 314748 20367139 ~ 20369094 (-) False timm10
XR_006250953.1 other downstream 370894 20290873 ~ 20312948 (-) False zdhhc5a
TU6776 other downstream 543912 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU6779 other downstream 543912 20137072 ~ 20139930 (-) False si:dkey-9i23.16
unassigned_transcript_105 other downstream 570629 20113142 ~ 20113213 (-) True trnae-cuc_4
TU7255 other upstream 1031399 21718139 ~ 21723065 (-) False G5104
TU7256 other upstream 1032360 21719100 ~ 21723065 (-) False G5104
TU7263 other upstream 1033320 21720060 ~ 21766284 (-) True G5104
TU7258 other upstream 1034764 21721504 ~ 21723065 (-) False G5104
TU7269 other upstream 1037647 21724387 ~ 21772762 (-) True G5108

Expression Profile