RNA id: XM_043244489.1


Basic Information

Item Value
RNA id XM_043244489.1
length 2857
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC122348696
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22272818 ~ 22287521 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGCAGTCTTTAAgcctaataaatattttacataggAGCAGAATATGACATTTCCATTTGATACCTCAAAACACTAACAACCACTTAATATGCTAAAATGAATTATAACATCATAGTAACTGctaaaaatcatgttaaatatcttaaaaagcACAGTGAAAATCAGCTTAGCACACTTAAGCAACGTGATAAATAGCATTCAGAATAACTACACAGCATTGCGAAAGAAGCACttgttagcaacatgctaaaaatcAATTACGCAACTATATAGCAATGTGCTAAAAACACCATGAACGCATTGCACTGAGCTAAACACTTTAGTCCAAAACTTTAGTCGCTAGCTATACAAATATGAACCCTAGAAACGGTCATATGTAAGCATATGCAGAGACATACTAACTGTAAATGGTATAGCCTGCAAAATAGGAATTCTGCCTTATCGTCAAGCACAGGCCTGTCTGAGTGAGATAACCCGGCTATGAGGTAAAAGACACTGAGGCTCAACGGCACTTTGGTGCTCACTGTATATACTACCACAAACACGTGTGAACAGAGCTCACGAGACAGGCAGGTGCAGGACTACAAGCCTGTGAAATACATGTCAGAAATTGTGCCCCCTGAAGTGAGACCTAAACCTGCCGTCCCAGCTAAGCCCTCTCATGTGGTCCCGCCTTCTAGCAGTCCCTTTGTGCCTTCACTCCAAGGAACAGGGGGTGAAGGTCAAGGGTCAGGTCGGGGATCTGCATTGCTCGGATACATCGGAATAGACACCATCATCGAGCAGATGCGGAAGAAGACCATGAAGACAGGCTTTGACTTCAACATCATGGTGGTTGGTCAAAGTGGTCTTGGGAAATCTACTTTAGTGAATACTCTCTTTAAGTCACAGGTGAGCAGGAGGAGCACAGGCTGGAGTCGTGACGAGAAGATCCCAAAGACTGTTGAGATTAAATCTGTATCTCATGtgattGAGGAAGGAGGGGTGAAGATGAAGTTAACAGTCGTTGACACACCAGGTTTTGGAGACCAAATCAACAATGAAAATTGCTGGGAGCCCATATCCAAATTCATCAATGAACAATATGAAaaatttctgaaagaagaaGTCAACATTGCTCGCAAGAAACGCATCCCTGATACCAGAGTGCACTGCTGCTTGTACTTCATATCTCCAACTGGACACTCGCTTCGCCAGTTGGATATTGAGTTCATGAAACATCTGAGTCGTGGGGTCAACATCATTCCTGTCATTGCCAAGTCGGACACACTCACTCTTGAGGAGAAAACTGAATTTAAGCAGAGGGTGAGGAAGGAGCTGGAAGCGTGTGGGATTGAGTGTTATCCACAGAAGGAATTTGATGAAGACATGGAGGATAAGAGTGATAATGATAAGATCAGGGAGGCGATGCCCTTTGCGGTGGTAGGAAGTGATAAAGAGTACCAGGTCAATGGCAAACGAGTTTTGGGCAGGAAGACAGCCTGGGGAGTGGTGGAGGTTGAAAACCCAAATCACTGCGAATTCTCTTTACTTCGTGATTTCATGATTAGGTCTCACCTCCAGGACCTGAAGGAGGTCACTCATAACATCCACTACGAGACGTACCGTGCCAAAAGGCTCAATGATAACGGAGGTCTGCATCCCATATCTTCTTCTGGCCAAGACACACAAGAAAGCAACCTGTGAGGAAACAAATGAGCGGCATAGTAAGGATGCGAGAGAAGACTAGGATTCGTCTTGTAGTAATTCAGCTGTGCATGCTCAGATGATTTCATCGCTGTGGAGGTTTTGTCCTTATGATCCTTTTGACCCTTTGTGGAACTCGTCATCATCTCTTGTCGCACAACCTTTGAAAATTAGAAAAAGCCTTCCCAAGTTGCTCGCTCTGCTGACTTAAGCGAGCGAGTTCGCTCGTGGTAATCTCGTTCAGGTCTAATATGATGGCACATAGCCTTGCGTTGGCATATCACTAGCTCTGTCCTCTACTGAAACCTGTTAGACACATTTGAGCAGTTTTATATCATTAGGAGGAGGACTGCACTGCCACTGCAGTCTGCAGATCAACGGgccttatttattaaaacatttagcaCACTTTTAGTACCTATACCGATTAAACAAACTCAAGTTATGAGTAAGCCTGCTAAATTTTAACATGCAAGTGTTTTAATAAGTATTTCATCTCTGGCCCTGTAAGGGTGCCGCAGTGTTTCTCTAAGTACACTAAATTCTGTAGTACTAACGTCTTTTTACCTTTGCTGTGTAACTCTGCCAAAGCTAGTCTCAGAGGACTCTGAAGTGACCGCTGAAGTATTTTCCTATAGATCATTCCAAACAGGTACAACAGTTTATGCCAGCGGCTAATGTGTTTAAAGAGCTTCACGGCGGCCAATTAAACTTCAGAAGGAAACCGAAAGAACACTGATTAAAATGATCAGTGCCTTCAACAAAGTTTTGAGGTTTTCTTTAGCACATTTTGTATGGACGCACCCCACGTTTGTGTGTATGAGTATAAAAGTTACAAAACTTTctcaaatattttgcatatggTAACAGTGATTTCTCTCTTACTATGTGAcggcatttttattttcattcccCACGTGTGCCAAAATTTCCAAACGTGTGTTTACATGTAGCTCTGCATCCCATCTCACAACATCACTTGATACGTTATGTATGTATACGCACTGATCCTAAATCAGTTCACCACCTTTTTCATATCATGTTTAATTAATGCCGGTGTGGAGTAATAAAACGCCTCTGAACAATAATTACAAAAcgttatttatattgtatttatgttcTATTTATTATGAcacttatgttttaatttaataaacatgtttgcCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7636 lncRNA downstream 228681 22043902 ~ 22044137 (-) True G5327
TU7183 lncRNA downstream 652237 21612918 ~ 21620581 (-) True G5047
TU7205 lncRNA downstream 721583 21550352 ~ 21551235 (-) False si:dkey-37g12.1
TU7131 lncRNA downstream 862247 20906170 ~ 21410571 (-) False ctnna2
TU7094 lncRNA downstream 1553928 20718232 ~ 20718890 (-) False LOC122349798
TU7670 lncRNA upstream 3106 22285160 ~ 22287133 (-) False LOC122348696
TU7671 lncRNA upstream 3164 22285218 ~ 22287133 (-) False LOC122348696
TU7696 lncRNA upstream 66460 22348514 ~ 22382972 (-) False G5366
TU7704 lncRNA upstream 66460 22348514 ~ 22382972 (-) True G5366
TU7709 lncRNA upstream 130408 22412462 ~ 22413930 (-) False G5368
XM_043244514.1 mRNA downstream 2084 22240381 ~ 22270734 (-) True LOC122348711
XM_043244521.1 mRNA downstream 2086 22240381 ~ 22270732 (-) False LOC122348711
XM_043244538.1 mRNA downstream 14568 22240381 ~ 22258250 (-) False LOC122348711
XM_043244504.1 mRNA downstream 19294 22240381 ~ 22253524 (-) False LOC122348711
XM_043244531.1 mRNA downstream 23827 22240381 ~ 22248991 (-) False LOC122348711
XM_043244559.1 mRNA upstream 6628 22288682 ~ 22293361 (-) False serhl
XM_043244568.1 mRNA upstream 6628 22288682 ~ 22293221 (-) True serhl
XM_043244839.1 mRNA upstream 50920 22332974 ~ 22336292 (-) True c1h19orf67
XM_043234708.1 mRNA upstream 103459 22385513 ~ 22411664 (-) True pnpla6
XM_043234725.1 mRNA upstream 103459 22385513 ~ 22411587 (-) False pnpla6
unassigned_transcript_106 other downstream 388628 21884118 ~ 21884190 (-) True trnat-ugu
TU7268 other downstream 476380 21774634 ~ 21796438 (-) False LOC122348907
TU7269 other downstream 500056 21724387 ~ 21772762 (-) True G5108
TU7263 other downstream 506534 21720060 ~ 21766284 (-) True G5104
TU7773 other upstream 257630 22539684 ~ 22550950 (-) False atp11a
TU7878 other upstream 631846 22913900 ~ 22916405 (-) True G5468
XR_006251794.1 other upstream 1490569 23772623 ~ 23916448 (-) False LOC122351696
XR_006251793.1 other upstream 1490569 23772623 ~ 23916446 (-) False LOC122351696
TU8134 other upstream 1750809 24032863 ~ 24034499 (-) False G5624

Expression Profile