RNA id: XM_043235601.1


Basic Information

Item Value
RNA id XM_043235601.1
length 7745
RNA type mRNA
GC content 0.44
exon number 29
gene id atp11a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22539684 ~ 22602648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGCTCGTGACGTTCCGGCGCTAACCGACTGGAGTCGGGAGAGGAGAGCTCTACTACACCGAGAAGAAGCAGAGCGAGTGCGTCAGTACACCGGAGGGACGCTTGACAAGGCAGAAGTGGCCGGTCCCTTAACATATCCAGGCAAAACCTGGGAAAACGAGAGCTCGTTGTTTTTCCTTCTCAGTCAGGGTGTTTGTAGGTGAAACCGGAGCATGTCACTATGACAACGTTTGGACTTTCCACAGTAGCCTTCTCCTTCATCATCTCAGTAACGTTAGGTGCTGCTCTTTAGGTATCGCAGTCGCGGTAGTCGCGTAGGGCTGTCAGTTGTCGAGccttgaagaagaagaagaagaagccgTAGAAGACAGTCATGGATCAGAGACTTTCTACAACGATCAGCTAGCGTCTCGTGTGCCCCTTCTTCAAGATCAGAGGAGAAAGCGAAGACAGCGCACCTGGGGCAGAATGGATTTGAGTAGCATCAGGAAGCTCATCACTAGATACTGTACAGGAGAGGAGAGCTGGGTGGACAGCAGGACGGTTTATATTGGACATAAAGAGCCTCCACCAGGAACAGAAGCGTACATTCCACAGAGATTTCCTGACAACAGAATCGTATCCTCAAAGTACACCTTCTGGAATTTTATACCGAAGAATCTCTTTGAGCAGTTCAGAAGAATAGCCAATTTCTATTTTCTGATCATCTTTCTAGTGCAGCTGATCATCGACACACCAACCAGTCCTATGACCAGCGGTCTCCCTCTTTTCTTTGTCATCACTGTCACAGCCATTAAACAGGGCTATGAAGACTGGATCAGGCACAAAGCGGACAACGCTATAAACCAATGTCCAGTCCACGTCATCCAGCATGGCAAAGTCGTACGCAAACAGAGTCAAAAGCTACGGGTGGGTGATATTGTCCAGGTTAAGGAGAATGAGACATTTCCATGTGACCTCATACTGCTCTCCACAAGTAGAGAAGATGGTACATGTTTCGTCACAACAGCCAGCTTAGATGGAGAGTCCAGCCATAAGACCTATTATGCAGTTCAGGACACAAAGGCATTCAGCACAGCGGAGGAGGTGGACACACTGCACGCTACGATAGAATGCGAGCAACCCCAGCCAGACCTGTACAAATTTGTGGGACGCATCAATATTTATTTGGATCAAGACGAGCCCATCGCGAGACCCCTGGGTTCTGAGAACCTGCTGCTGCGTGGAGCCACactgaaaaacactgaatacaTACAcgCCGTGGCCATCTACACGGGAATGGAAACCAAGATGGCCCTCAACTACCAATCCAAGTCTCAGAAACGCTCCGCTGTTGAAAAGTCTATGAACGCCTACCTGATTGTGTACCTCTGCATTCTGATCAGTAAAGCTCTGATCAATACTGTCCTGAAATATGCCTGGCAGGCCAACCCAAACAGAGATGAGCCCTGGTACAACCAGAAaactgagacagagagacaacGACATGTATTAATCCGGGCATTCACAGATTTCCTCGCCTTCATGGTTCTGTTCAACTACATCATTCCTGTGTCTATGTACGTGACTGTGGAGATGCAAAAGTTTCTCGGTTCGTACTTCATCTTGTGGGACGATGACATGTTTGATGAGGAGCTCGGAGAGGGACCGCTCGTCAATACCTCAGATCTTAATGAAGAACTTGGACAGGTGGAATATGTCTTTACAGACAAGACTGGCACTTTGACGGAAAACAACATGGAGTTGAGGGAATGTTGTGTGGATGGACATGTTTACGTGCCACATGCCATCTGTAATGGGCAGATCTTACCTGGAGCTGCTGGAATGGATATGATCGACTCCTCTCCAGGCGTAGATGGAAAGcaGGAGCGAGAGGAGCTGTTTTTCCGTGCTCTGTGCCTCTGTCACACAGTCCAGGTGAAGGAAGAGGAGACGGTGGATGGCATAAAGAGAGGTATCCATCAGGGCAAATCCACCTCCTTCTACATCTCCTCCTCTCCAGACGAGGTTGCACTGGTGGAGGGCATGAAAAGGTTGGGCTTCACCTATCTCCGTCTGAAGGACAGTCACATGGAGATCCTCAACAGAGAGGATGAGATGGAGAGatttgaactgttggAGGTGTTGAACTTTGATTCAGTGAGGAGGAGAATGAGTGTTATTGTAAGATCAACCTCAGGAGAGTACTATTTGTTCTGTAAGGGTGCGGATTCTTCTATTTTCCCACGGGTGGTTTCTGGGAAGGTGGAGCAGGTCAGAGCGCGAGTAGAGCACAACGCTGTGGAGGGCTTACGGACCCTTTGTGTGGCTTATAAGAAGCTGACTCATGAGGAGTATGAGGAAACATGCCGTCTGCTCAACAGTGCTAAACTAGCTCTGCAGGAGCGCGACAGGAAACTGGCTGAAGCTTATGATGTCATTGAAAAGGATTTCATCCTGCTGGGAGCCACAGCTGTGGAAGATAGgctGCAAGATAAAGCAGCCGACACGATTGAGTCCCTGCACAAGGCTGGCATGAAGGTTTGGGTCCTCACAGGGGACAAAATGGAGACTGCAGCAGCCACATGCTATGCTAGCAAGTTGTTCCATCGCAATACACAAATCCTGGAACTAACAACCAAGCGGACAGAAGAGCAGAGTCTCCACGACGTCCTGTTTGATCTGAGCAGAACTGTCTTGAGACAGCATGGCAGCATGACCAGGGACACTTTCTCAGGGCTCTCAGGTGATTTCCAAGACTATGGTCTGATAATCGATGGAGCAACACTGTCAGCTGTTCTGAAGCCGACACAGGAAGGACCCAGCAACGGAGGGAACTATAAGGAGATTTTCCTGGAAATCTGCAGGAACTGCAGTGCTGTTCTCTGCTGTCGCATGGCACCTTTACAAAAAGCACAGATTGTtaagctgataaaagcatcaaaaGAACACCCCATCACACTGGCCATAGGGGACGGAGCCAATGATGTCAGCATGATTCTGGAGGCTCACGTGGGCATAGGGATCATGGGTAAAGAGGGGCGTCAGGCGGCCCGTAACAGCGACTATGCAATTACCAAGTTCAAACACCTGAAGAAGATGCTGCTGGTTCACGGACACTACTACTACATCAGGATCGCCGAGCTGGTCCAGTACTTCTTCTATAAGAATGTGTGCTTCATCTTCCCTCAGTTTCTCTATCAGTTCTTCTGTGGCTTCTCTCAGCAGCCACTCTATGACACCGCATATCTGACCCTGTACAATATCAGCTTCACGTCATTACCCATCCTCCTCTACAGTCTGATGGAGCAGCACATTAACATGGACATCCTCAAACGGGACCCTACTCTTTACAGAGATATTGCCAAGAATTCCCTCCTGAGATGGCCCACCTTCATCTACTGGACGTTTCTCGGGGTCTTTGATGCCGTGGTCTTCTTCTTTGGTGCTTTCTTCCTTTTCGACAACACAACTTTCACCAGCAACGGACAGATGTTTGGTAACTGGACCTTTGGAACACTGGTATTCACTGTCCTGGTGTTCACGGTCACGCTAAAGCTTGCCCTGGACACACATTACTGGACGTGGATCAACCACTTTGTCATATGGGGTTCGCTGCTTTTCTATGTCATCTTCTCCCTCCTGTGGGGAGGCATCATTTGGCCTTTCCTGAACTATCAGCGGATGTACTATGTGTTCATGCAGATGTTGTCCAGCGGTCCTGCGTGGCTCAGTATCATTCTGCTGATTATAGTCAGTCTGCTGCCTGATGTGGTAAAGAAAGTGTTGTGTAGAGCTCTATGGCCCACCACCACAGAGAGAATACAGAATGCCGATAAGTTGTATAAGGGCCACCTGTCCGAGTTCACTCCCCTGTCCTCCCTCCATGCTCCACCTGTGCGGAAACACGACAGACATGGCAACGAAAACCAGAACCACACCCATCGCAGGTCTGACTCCTCCCCTCCCAAAAAACTGATGTGTACCTACTGGGGGGGCAGGCCTGACTACTGCACCTTCAGCTCCTTCCTCCGAATAGGAGAAAACCCAAGATTCTCTGGGGCAGCTTACGCCTATAGCGCGCCGGGGCCCGAGACGTCCGTATGACAGTCTCGGGCCGCACGAAAGAAATAGTCGACTTATCCAGTCAAATTAGCCCTCGATTATTCCAGAGTCAAGATTGGGACACAATCTTGGCTTGTTACCCTTTATCTGAAACAAAAGCACTGAAAGGCGTTCTTGTGGTATACGCTAATGGGCTAGCGATGCTGTGTGTTAATTTAGAAGCTGGAGGAAGGCCAAACTGAATTGGCTGCACCATCTGCGAGTGTGGCGTACTGCGCTAAGCGGCCTTGGGACCTATTTACCTTGTTTCGTTTGTGTGTACGTTTAAACGTCAGAGCGTGTTCCCTTTACACTGTGGGTTTACGTGTTCGCTCACCTACCCTTGTAAATCCTTCGTGTGAAAAATTACTTGAAACCTACACTGGGCAGTTGTAGCACAAACCTTTCCATCTCAAATGCAACCCCTACCACTAAATATTCATGTGGATGACAGTTAAAATGGCCTTGGATGATCTCGAAAACTGAccgttctgtttttttttttcttcttttctttgttctttgtcGTCTCCCTTTCCCTTTTCTGTTGTGTGCTCCTTCTCTTTTCTTGtcctccttttttatttcatagaaCAAACTGGTGTTGCCTTTGTGCAAACCTGTTATCGAGGAACACTCCATAGCCTGCGATTGTCTTTGTCCGATTGCATTGTAAGTGGCTAAATTTGGCCATTTCTGTTGCTGCACTGTACTAGAGcgaactctgtgtgtgtgtgcgcgtgtgtgtgcgcgagtgtgaAAGTAGGCCTTTGTTAGAACAACTACGAGAAGACAAATTGTAACTGGACTGTCATTATGTCTCACCCTTTAACTTTCAAAAAGGTGGAAATCCACTCATGTTCCAAAGTTTGTAAAACCATTGACTTGTGTCATTGTGACAACCAGTTACTCTTTCCTAGCTGCTTGACGATTCGCTTTAAAATGTCGTAGTTCCTTACGTATAATCAGTCCTTTAGTTTTGTTAGCGTAGAACCAGTACAGAATGCTAATGGTCACGCTAGCCACCTTAGCTTGACTGTTCTGCCTTAATGCTAATGTTTTCCATCTTTTACACCACAGTTTGGAACCAAAGGTTGTGAAATACGGAGTATTTTAATGTGCGTTAGTTGCCTTATGCTCAAATAGAAATGGAGGAAAAGTGTTTGATGGCATTAGAAGAATCCCACCACACTGCCTTAAGTTGACATTGCACCAGCTGAGAATGGAGGCTGATAAAAGTAGTATCCAACATCATCCAGTGCCACCAACACGGCCCAGGGCTCctgaagataaacaaaagatattttatgAGTTCTGTTGATGTAAACATCTTTGTGCTTtcacaaaaagtacaaattaacTTCCTCATCAGCACACTTTCATGATTGTAATGTCCAATTCGACTGTTCCCGAAGCCTTTTGTCTGTATTAATGTAACTGTCGGAGCCCTGTGCTGAGTTGCTATCATTTCCTTGTTGCACATTACTAATTTATGATCTGATATAAATAAGTCAGATGGAATTAGCCTGTGATACTGTTCATGAAAAACTCATTAAACTAACAGCCTGATCAAGGTCAGCATCACAGATGGCCTATCTTGGCCACTATGTTCACAGAAATGGCTCTTTTCTAGAGTGAATAACGCGAATAATAGAGTGAATGATTACCAGAAAacgtttaaaatgtcattttcataaaCCTATTGCGAAGCGCATTCAATTCCATTTCCGTCCTGTCAGTGAATTCAAATTCACAGTGATTTGATATTGAGTGTGAATGCAATTCCGTTTAAATTCCAGATTGCACTATagcaaatgaaatgaacaccTGTTGAattcaaacacacatttatttgtgaatgtaGTTCAGTTTAAATTCCAGAAGTAACACTGTAACAGACTGGACACCGCATGATTTGACATCATTCTCAGAAAAATATTGTGAACTACTATTAGTTTTATCTCCTTCCTGtcaattaattcaaattcacaTTGATTTGAATTGAGTGTGAATGTTTAAATTCCAGATAACACTGTAACAGACAGACCAACTGATGTCTTACCTGTCTAATATATCAttctcataaaaatattcaagcatgtACAATTCTGTCGCCATCCAGGAAATGAATTCAAATTCacattgatttgaatttgaattgtgtgtgaatgcatttaaatttaaattcaaggCAACACTGTAActatacaaaactaaaaatcagaCCATTTGATCATCAAAACTACATCGGTTTGTCCACAATACCATTTCCCTGCTGTCTTTTACATTCCAtgcctgtttctttctcattttgtttCTGCTCCCATTGATTCTGGAATGTAGCGCTGCTCTTCATCTCGACTTCTTTCCTCGCATGCGTTTTTCCTTCGCCCGCCCTGTCATTCAGTTCTCGTGACGAGGCCAGTCACCCTTTTCACCATTTTAACCATCATccatgacagagagagaaagtagGTGATGTCAAAGACTATCAAAACCACCGTTTTGATGATTACTCCAAGCTTCTTGTGGGTAGGTGCCTTCTGGTGCTTTTTAACCTCAATGTATGTTCATGCGTTCAGTTCAGTGAAGCGTGCCCATACATGCGTTTTCATTAGCCCATCAGTTGGCCTGCAACAGAGAATGTCATGGGTTGTTATGGGTATAGCTAGTTTGTTAAAAGGTTTAAGAGTCATATTTGGGTTAACGTTGATGAAATGTCACAGAATAGTAAAAAAAGAATGTCCTTTTTTTGTGCACacattatatctatatatagaatatattgaTGAGTATATTGATGTCAAGGTTTACAAAGGCTgagtggatgaatggatggatgaatgaatgaacataattatttaacatgtCGAGTGAGTAACTTTATTTCTGGTCCAAAAGTGTATCATTTAATTTGTATGAATGTAAAATCTGTCAGAAGTCAAACACTGTCTATTTTATTGATTATGGAGGTCTGAACTTTGCATGTCGTGTAATGCCGTAGTAATGGACCAACCACTGAGCTTTATCAAGCATTTGAGTCATACTCTCATTTATATAAACCACTTTTATAAGTTCGGTTCTAATTTTCAGTCCAGTCCAAGTGATTCACATCTACGATACCAAGTACTAATCAATGCTGGCaaatctgaaacaaaacaagaatgtGCTTTTAGATAGAATCTctgattatgtttttttttttttttttttttttgttagattgCTAGAATAGGAGTAAACTAATTAATTTCATGGGGTTTTTTTaccgttatttttgttttgcattctaCTGTATTTACTGTTTATGTCACTTTTACAGTTCTCTCTGGCTTCCTGAATgtaacaaaaaggaaaaaaagccaCTATTGTGCACTAAACAAAAAACGCGTACCGTTAATTGGATAAGCCGTGAACGACAACTACAAACTACCACAGCTAAAAAGCTGGTTCTAGAACAAATGTCCCTtcacaaatgtgttttcttctcGTTTCTGACGAACTGTTGTTTTgaatcagaattatttttttgtaatgtaggAATAATTTGAACACTGAACGCTGTCTGCCTCAGGGGGTGCGTTCAGGCACTGGCAAACACTGTATCCTGTCTGTCTAAAAAGGCTACATGAAATAGGTATTTTGTATATCTTGTGGGGTC

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7768 lncRNA downstream 628 22539269 ~ 22539520 (-) True G5408
TU7765 lncRNA downstream 13283 22526641 ~ 22526865 (-) True G5405
TU7764 lncRNA downstream 13726 22526116 ~ 22526422 (-) True G5404
TU7716 lncRNA downstream 93500 22444958 ~ 22446648 (-) True G5369
TU7752 lncRNA downstream 101794 22434613 ~ 22438354 (-) True G5395
TU7780 lncRNA upstream 1109 22603757 ~ 22604687 (-) True G5413
TU7789 lncRNA upstream 17161 22619809 ~ 22621217 (-) True G5422
TU7825 lncRNA upstream 79001 22681649 ~ 22682096 (-) True G5445
XR_006250464.1 lncRNA upstream 156980 22759628 ~ 22765115 (-) True LOC122341430
TU7852 lncRNA upstream 236308 22838956 ~ 22839592 (-) True G5464
XM_043234731.1 mRNA downstream 128450 22394516 ~ 22411698 (-) False pnpla6
XM_043234715.1 mRNA downstream 128599 22385513 ~ 22411549 (-) False pnpla6
XM_043235942.1 mRNA upstream 92182 22694830 ~ 22700547 (-) True cdadc1
XM_043250116.1 mRNA upstream 98683 22701331 ~ 22709814 (-) True rcbtb1
XM_043250122.1 mRNA upstream 98683 22701331 ~ 22707993 (-) False rcbtb1
XM_043241154.1 mRNA upstream 109079 22711727 ~ 22714547 (-) True ebpl
XM_043239827.1 mRNA upstream 112877 22715525 ~ 22730884 (-) True kpna3
TU7673 other downstream 211219 22259439 ~ 22328929 (-) True G5356
unassigned_transcript_106 other downstream 655958 21884118 ~ 21884190 (-) True trnat-ugu
TU7268 other downstream 743710 21774634 ~ 21796438 (-) False LOC122348907
TU7269 other downstream 767386 21724387 ~ 21772762 (-) True G5108
TU7258 other downstream 817083 21721504 ~ 21723065 (-) False G5104
TU7878 other upstream 311252 22913900 ~ 22916405 (-) True G5468
XR_006251794.1 other upstream 1169975 23772623 ~ 23916448 (-) False LOC122351696
XR_006251793.1 other upstream 1169975 23772623 ~ 23916446 (-) False LOC122351696
TU8134 other upstream 1430215 24032863 ~ 24034499 (-) False G5624
TU8141 other upstream 1430215 24032863 ~ 24041997 (-) False G5624

Expression Profile