RNA id: TU8864


Basic Information

Item Value
RNA id TU8864
length 1713
lncRNA type read_through
GC content 0.39
exon number 2
gene id G6077
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24986984 ~ 25204897 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTGTTCTATGCCGACCAATGAAAATGCTACAGACCTGAGACTCGTGAGGCTTCCAGCCGATCATGTAGAGGATCTGAAATGTAGCTGGAACTGAACCGTCTTCATTGCCGTACATCTCTAGGAGGAATCCAGTTAACAGAATAACACCATTTCTAGGATCGTCAGGTGAACAGAATGCATTTTAGAATCAGTTGTTCTTAAATATTTCCcccaaaatatttcataattatgcaATACATGACAAAGCTGCTAATTTACTGAATCAAGGCCGctatgataaatacattttatagctCTTCGTGGTTTACACTTATTACCAATGAATACGAATTTTCTCATTCGTTTTTATTATACGTTTTGCtcagaaataaacatttctatgCAATAAAATGGTTTAGAGATCGACAaaaattattagtgctgtcaaattaataCAACTAActgtatccaaaataaaggtttttgttaataaaaattacagcacgcattgttatgtatatataaatgcacacacgcatacatacatttatatttaagaaaaatgttatgtttatatgttaaatatttctatatgataatttgtatgcatataaataccTGTAAGTATatccaaaatatatgctgtatgtgcgtgttatatatatatataaactttttttggaagcaattctttgacagcactaaaaatgattaaaaatagatttaaattataCTCTTAAATACAATTTCTGTGACTTTTCCCGGTCTAGAAATCAAATGCTATATCTTATATGTTATAAAATGGTTATTTGTTAAAGgaacaaattataaaatacaatttcatcTAAAACgtgctttttaattgttttagccGATACTAACCTTTTATTCCATCTCCCCTGGTTGAGAATCACTTTTATACATAAAAGGTTTTCTTGTagaacattaaaacataaaaaattaacataTAATATCAGAGGACCTGCACTGCACTGAAGTGCATGAAAGTTAAACGGAGCATAACCACTGTTCCATAACCAAgtataaatatgtgataaaataaatgcaatggaAATTTTAATCGTCGAATTGATTTGCTTATAAATGTTAAACTTGAGTGCAACCCCTCCAAGCGTTCGCTGCGGCCTCACCTTTATAAACAGCAGCTGCCGCCAGGATCGTGTCTCTGTGTAGAAGCGTCTTCCTGTTCCACGCACAGTTGCTTTCCCCCATACCTGAAGTGCACGAACACACCGTAAACATTTCCACGACCCGACGAGACGCTCAGATTTAAAGGGTGTACCTTGTAAGTCGCTCATGACCTCCAGCATACCGGGGTAACGGACCTGAACCTCGTCGATGTCCTGCGCGACAACACAGAAAAGCCTCGGTGCCATTCAGCTCAAACACGTTGCGTGGCCGAATCAAAACGGTGAAATACTTATACCACAGTGAGCATCCTGAAGCCGGCCTGTCCCAGGAGGTTGCCCAGATCTGTGACGGCCGTGTAGGGCGAGATATGAGGAGCAAAGCCGCCCTCCCTCTCCAGCTCGGCCAACTGCAGGGAACATCGCAGCTCGTACAGCGTCTCTCCGCCGACCATCGCCCCGATGAACACACCGTCCGGCTTCAACACCTGGTGGATCTGaacgaccaaaaaaaaaagggtactttgtattatttatcaCGCTAGACAAGACACCCGGTTCGATCCTCATACCTGTCTCAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8832 lncRNA downstream 73516 24911141 ~ 24913468 (-) True G6061
TU8826 lncRNA downstream 113443 24872629 ~ 24873541 (-) True G6058
TU8818 lncRNA downstream 117979 24868441 ~ 24869005 (-) False G6056
TU8811 lncRNA downstream 123610 24844701 ~ 24863374 (-) True LOC122345669
TU8810 lncRNA downstream 123610 24860630 ~ 24863374 (-) False LOC122345669
TU8898 lncRNA upstream 48500 25253397 ~ 25258307 (-) True G6104
TU8915 lncRNA upstream 78478 25283375 ~ 25427936 (-) True G6118
TU8923 lncRNA upstream 109619 25314516 ~ 25316688 (-) True G6125
TU8932 lncRNA upstream 181280 25386177 ~ 25386576 (-) True G6132
TU8937 lncRNA upstream 193594 25398491 ~ 25399132 (-) True G6134
XM_043225513.1 mRNA downstream 2954 24977040 ~ 24984030 (-) True esf1
XM_043225434.1 mRNA downstream 2972 24977040 ~ 24984012 (-) False esf1
XM_043248818.1 mRNA downstream 35719 24923196 ~ 24951265 (-) False jag1a
XM_043248810.1 mRNA downstream 35719 24923196 ~ 24951265 (-) False jag1a
XM_043248800.1 mRNA downstream 35719 24923196 ~ 24951265 (-) True jag1a
XM_043226755.1 mRNA upstream 3880 25208777 ~ 25225402 (-) False LOC122329893
XM_043226676.1 mRNA upstream 3880 25208777 ~ 25225402 (-) False LOC122329893
XM_043226590.1 mRNA upstream 3880 25208777 ~ 25225402 (-) True LOC122329893
XM_043246158.1 mRNA upstream 248307 25453204 ~ 25466466 (-) True spred2a
XM_043239774.1 mRNA upstream 304677 25509574 ~ 25522370 (-) True ppp3r1b
TU8851 other downstream 13613 24972491 ~ 24973371 (-) True G6073
TU8816 other downstream 116519 24868441 ~ 24870465 (-) True G6056
TU8136 other downstream 814922 24167385 ~ 24172062 (-) False G5624
TU8922 other upstream 99700 25304597 ~ 25307971 (-) False G6124
TU8921 other upstream 101374 25306271 ~ 25307971 (-) True G6124
TU8935 other upstream 193594 25398491 ~ 25400017 (-) False G6134
TU8940 other upstream 196417 25401314 ~ 25402355 (-) False G6135
TU9017 other upstream 346852 25551749 ~ 25555235 (-) False prokr1a

Expression Profile