RNA id: TU9035


Basic Information

Item Value
RNA id TU9035
length 1357
RNA type TUCP
GC content 0.45
exon number 3
gene id LOC122353196
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25714102 ~ 25715704 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAAGTCTCTCTGTTTCCGGTTGCGTTCAAGCGATAGAAAATGGCTCAAGGCAAACAGAAATTTAAAGCGCAACGACCCGGAGGAGCTAAAAAGCAACAACAGAAGCCGAAAGGACCGAAGAAAGGAGGAAGGATCATCGCTCCCAAAAAAGCTCAGGTGGTCCAGCAGCAGAAGCTGAAGAAGGGTTTGGAGGTGGCCATCAGGAACAGGATTGAGCACGAAGTCACGCAGAAGGCCAGCACGTCCCTTCACAAGAAACTGAGCGTGCTGAAGACTCCCGCGGGGAAGAGCGGCGGCGCTGGACCTCCAAAACCCGGACCATCCAAGTCCACCTGACACCAGAACACTGCGGGGCCATGGACCGCCGCTAGAGGGCGCCACCGcgctataaatataaatacgtTCACTACTTTCTGTGATAGgtttatttttagaaacagCAAAATATGGTGTGGAATATGACGTATGTGATCTTTTAGACTGTGCttatatttatgcaataaaaCGAGAGAGCATCGTTAGCTTTCATGATGCctaaattgtaactttttttttggtcgtGGGAAAGCAAAGcggttaatatatttataattatacgCGACTCTGGACCGCAAAAGGAGGGATGTGTTTTCAAACATCGATGTGTGGTCTGTTAGGATGCCGGAGATGCAAAAATCTggatggtgcaaaaaaaaaaaaaaatctatatattgagaaaatcacatttaaaattgtccaaatgaattcttagcaatgcacgttaatcaaaaataaagtagcAAATTTTCAACACATCGTCATGGGACATGAgctttgctttatatatatttttaatgttgccCCTTACAATGTACTGTTGGCTAGAAATATCATTACCACTGGTTTAGAGTCATATATAATGTTTTCCTCTCTTAGGTCGCCCCCATTCAGTCTTTTTTAGGCCAAAAAGGTCGAACAGGCCTGATTTATTACCTTTGGCTCTCAGCATATGATCGACAGCAAAACACTGACTCAGACAACTTTATTAGCTTTAAAGATATAAAGGCAAAGTGAGCACTTCTAGATGTTTAAACGATGACTGCACTACATCTCCTAGCTGGCCGTAGCGGAGGCGTAGACGCTCACAGGACTCGGAGAGGCTGCTGGCTGTAAGAGGAGCGCAGGAAGCGAGGGAACGAGTCTTTAGCCATCAGGGAGAAGATGCGCCGCTGGGCCTGGAGGAAGGTGTCCGCCGCGGGCTCCTCCATCAGCCCCACCAGCGCCTCGCGGGTCTCGCTGTCCAGGTTCACCTGAGAGAGGAAACCGGCAACTTCTCACAAACCATGAGGAAGAAAtcgcttttttttattaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9030 lncRNA downstream 92357 25621434 ~ 25621745 (-) True G6201
TU9029 lncRNA downstream 93598 25620246 ~ 25620504 (-) True G6200
TU8988 lncRNA downstream 209248 25503940 ~ 25504854 (-) True G6165
TU8939 lncRNA downstream 311747 25400384 ~ 25402355 (-) True G6135
TU8938 lncRNA downstream 311747 25401943 ~ 25402355 (-) False G6135
TU9062 lncRNA upstream 21119 25736797 ~ 25737312 (-) True G6223
TU9628 lncRNA upstream 53229 25768907 ~ 25799273 (-) True G6594
TU9685 lncRNA upstream 115646 25831324 ~ 25858605 (-) False patl1
TU9689 lncRNA upstream 120260 25835938 ~ 25844994 (-) True G6634
TU9691 lncRNA upstream 123173 25838851 ~ 25846530 (-) True G6636
XM_043251204.1 mRNA downstream 128 25706824 ~ 25713974 (-) True LOC122353232
XM_043245021.1 mRNA downstream 12818 25687797 ~ 25701284 (-) True LOC122349099
XM_043234897.1 mRNA downstream 135303 25577222 ~ 25578799 (-) True junba
XM_043234909.1 mRNA downstream 145191 25564387 ~ 25568911 (-) False rnaseh2a
XM_043234919.1 mRNA downstream 145519 25564387 ~ 25568583 (-) True rnaseh2a
XM_043251183.1 mRNA upstream 480 25716158 ~ 25727538 (-) True LOC122353214
XM_043251139.1 mRNA upstream 94201 25809879 ~ 25813849 (-) True aptx
XM_043251149.1 mRNA upstream 94201 25809879 ~ 25813565 (-) False aptx
XM_043245059.1 mRNA upstream 141960 25857638 ~ 25863787 (-) True patl1
XM_043237101.1 mRNA upstream 353498 26069176 ~ 26076862 (-) True il15
TU9017 other downstream 158867 25551749 ~ 25555235 (-) False prokr1a
TU8940 other downstream 311747 25401314 ~ 25402355 (-) False G6135
TU8935 other downstream 314085 25398491 ~ 25400017 (-) False G6134
TU8922 other downstream 406131 25304597 ~ 25307971 (-) False G6124
TU8921 other downstream 406131 25306271 ~ 25307971 (-) True G6124
TU9696 other upstream 144195 25859873 ~ 25860408 (-) False patl1
TU9622 other upstream 415110 26130788 ~ 26135486 (-) False G6592
TU9833 other upstream 701181 26416859 ~ 26417879 (-) False smdt1b
TU9834 other upstream 701205 26416883 ~ 26417879 (-) False smdt1b
TU10045 other upstream 1086232 26801910 ~ 26802925 (-) True c1h19orf53

Expression Profile