RNA id: TU9628


Basic Information

Item Value
RNA id TU9628
length 1376
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G6594
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25768907 ~ 25799273 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGActgaaatagcttttttttaataattaaaaatgtaaacacatacaTTGTAACACGAAAAATAATGGCCACGGTGGGACATCTAAAACTGCCTATATCAACCTTTTGTTAAAACACAAGATGTCCTGTTTGTGAATTATGAATGTCAAGACCAGTTTAACATTATAAAGTGCTTCAGTTTTGGACCAAAGTCGATACTTTTGTCTTCTTTTCCCAAGTCATTCAGTGTGCAGCTGGGATCGTCTCTCAATTTTCTGAAGGTGTTTGACTAAAAAGCACCTCACggatttgaaaaataaagtcGATTGGTAGCACCTCGTTGCTTTTGGTCACTTCATGCTGTAGGCGAACAACAGCGGTGCCGTCGGTCGATGCCGTAAAAGTGGTGTAACAAACTAAACTTGAGCATTTAGGATAAGGAGACACATCCTGAGATATTAACTCCTGTACTAGAGGCCtatgaatttatttctattacaaaaaaaagcctCTCGAGGACTTACTGCACGATGAAACTTGtttcaaatcacaaaaatgtaacaGTTAGTAGCCTGCTGAGGGCCGCTATCGTAATGTCCAACATCGACAACGCGTCTGCTTGATACTACGTCCATTTGCTATGATTTTAAACCCCTTGACCCGGTTTGGCACGGACATGATTCGTTTCTGACTGTACAGCTTCACTCAACATGAACTCGCCTCCGCTTTCTGCCCGCCGTGGACACAACACCTAGGAAAACTCGGCTCAAGATCAGCGAGCATCTGTTGAAACCCACACAGAAACACTTCAGGATGACAAAGCTGGAACATGCTCGAGCTTACGATGGAGTCCTAAACACGTCATCCACGTAAAAAGCATGCAATTAACTTCTAAAGTCGTCCGCCCCGACTTCGCCGTAGACTTGAATACCACCGTAGCTATGACGACAGCGTGTGCTCCGCGCGTCGGGTCCATCAGCGGAGTGTTGTTTCAAGGCACGACACTTTCAAACACTTGACAATAAGAGTAACGATAGTGAAACATTGCACGTCGTTGCATCAAAATATCATTTGAGTATAGTTTTAAAACGCATatctaaaaaagtaaaagtacaaaGACCGAGAGCGGTCGCTGAAATGCTCTGAAGTTTGAAGCCTAGGCTAAATGAGGAGATGAACTTCGGCCCTGAATTGACGTTAGATGTCATTGGCAGTGTTTGATTGATATTTCCTCAGACGTCTCGTCAATCAAACATTCACCGCTAGTGGTGCGAACATCTTCAAGTTTCCTCGCGACGGGAGCGACGAGCACCAGGCTCGGCCTCGTTCGTTTCACTTCaatcttctctctctttttttttttttatttattttttttttttttttttttttcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9062 lncRNA downstream 31595 25736797 ~ 25737312 (-) True G6223
TU9030 lncRNA downstream 147162 25621434 ~ 25621745 (-) True G6201
TU9029 lncRNA downstream 148403 25620246 ~ 25620504 (-) True G6200
TU8988 lncRNA downstream 264053 25503940 ~ 25504854 (-) True G6165
TU8939 lncRNA downstream 366552 25400384 ~ 25402355 (-) True G6135
TU9685 lncRNA upstream 32051 25831324 ~ 25858605 (-) False patl1
TU9689 lncRNA upstream 36665 25835938 ~ 25844994 (-) True G6634
TU9691 lncRNA upstream 39578 25838851 ~ 25846530 (-) True G6636
TU9693 lncRNA upstream 58302 25857575 ~ 25858204 (-) False patl1
TU9713 lncRNA upstream 119297 25918570 ~ 25918785 (-) True G6650
XM_043251183.1 mRNA downstream 41369 25716158 ~ 25727538 (-) True LOC122353214
XM_043251160.1 mRNA downstream 53203 25714930 ~ 25715704 (-) False LOC122353196
XM_043251204.1 mRNA downstream 54933 25706824 ~ 25713974 (-) True LOC122353232
XM_043245021.1 mRNA downstream 67623 25687797 ~ 25701284 (-) True LOC122349099
XM_043234897.1 mRNA downstream 190108 25577222 ~ 25578799 (-) True junba
XM_043251139.1 mRNA upstream 10606 25809879 ~ 25813849 (-) True aptx
XM_043251149.1 mRNA upstream 10606 25809879 ~ 25813565 (-) False aptx
XM_043245059.1 mRNA upstream 58365 25857638 ~ 25863787 (-) True patl1
XM_043237101.1 mRNA upstream 269903 26069176 ~ 26076862 (-) True il15
XM_043237109.1 mRNA upstream 269903 26069176 ~ 26076861 (-) False il15
TU9035 other downstream 53229 25714102 ~ 25715678 (-) True LOC122353196
TU9033 other downstream 53229 25714668 ~ 25715678 (-) False LOC122353196
TU9017 other downstream 213672 25551749 ~ 25555235 (-) False prokr1a
TU8940 other downstream 366552 25401314 ~ 25402355 (-) False G6135
TU8935 other downstream 368890 25398491 ~ 25400017 (-) False G6134
TU9696 other upstream 60600 25859873 ~ 25860408 (-) False patl1
TU9622 other upstream 331515 26130788 ~ 26135486 (-) False G6592
TU9833 other upstream 617586 26416859 ~ 26417879 (-) False smdt1b
TU9834 other upstream 617610 26416883 ~ 26417879 (-) False smdt1b
TU10045 other upstream 1002637 26801910 ~ 26802925 (-) True c1h19orf53

Expression Profile