RNA id: TU9696



Basic Information


Item Value
RNA id TU9696
length 291
RNA type TUCP
GC content 0.48
exon number 3
gene id patl1
representative False

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25831324 ~ 25863787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTCGTGCTCTCAGCGATCACGTCGGAGGGAGAGGTGTTGGAGAAAGGAAAAACAGAGATCCTTACAGCAATCTGATGACGCAAAGAGAGAAGGAATGGGTAGCGAGAATCCAAATGATGCAGCTTCAAAGCACCGATCCATATCTGGATGACTACTATTACCAGAATTACTATGAAAAAATGGAGAAGCGTCAAGAGCGGGACAGAGACAACAGGAAGGAGCACACCACCAAACTCATCACTCCTCAAGTGGCTAAACTGGAGCACACCTATCGGCcagTGCAGTTTGTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9685 lncRNA downstream 1268 25831324 ~ 25858605 (-) False patl1
TU9693 lncRNA downstream 1669 25857575 ~ 25858204 (-) False patl1
TU9691 lncRNA downstream 13343 25838851 ~ 25846530 (-) True G6636
TU9689 lncRNA downstream 14879 25835938 ~ 25844994 (-) True G6634
TU9628 lncRNA downstream 60600 25768907 ~ 25799273 (-) True G6594
TU9713 lncRNA upstream 58162 25918570 ~ 25918785 (-) True G6650
TU9715 lncRNA upstream 78013 25938421 ~ 25938851 (-) True G6652
TU9757 lncRNA upstream 204151 26064559 ~ 26066186 (-) True G6687
TU9739 lncRNA upstream 231601 26092009 ~ 26096257 (-) True G6670
TU9618 lncRNA upstream 270380 26130788 ~ 26135486 (-) True G6592
XM_043251139.1 mRNA downstream 46024 25809879 ~ 25813849 (-) True aptx
XM_043251149.1 mRNA downstream 46308 25809879 ~ 25813565 (-) False aptx
XM_043251183.1 mRNA downstream 132335 25716158 ~ 25727538 (-) True LOC122353214
XM_043251160.1 mRNA downstream 144169 25714930 ~ 25715704 (-) False LOC122353196
XM_043251204.1 mRNA downstream 145899 25706824 ~ 25713974 (-) True LOC122353232
XM_043237101.1 mRNA upstream 208768 26069176 ~ 26076862 (-) True il15
XM_043237109.1 mRNA upstream 208768 26069176 ~ 26076861 (-) False il15
XM_043237118.1 mRNA upstream 208768 26069176 ~ 26076857 (-) False il15
XM_043237092.1 mRNA upstream 208768 26069176 ~ 26076856 (-) False il15
XM_043235457.1 mRNA upstream 216857 26077265 ~ 26083184 (-) True znf330
TU9035 other downstream 144195 25714102 ~ 25715678 (-) True LOC122353196
TU9033 other downstream 144195 25714668 ~ 25715678 (-) False LOC122353196
TU9017 other downstream 304638 25551749 ~ 25555235 (-) False prokr1a
TU8940 other downstream 457518 25401314 ~ 25402355 (-) False G6135
TU8935 other downstream 459856 25398491 ~ 25400017 (-) False G6134
TU9622 other upstream 270380 26130788 ~ 26135486 (-) False G6592
TU9833 other upstream 556451 26416859 ~ 26417879 (-) False smdt1b
TU9834 other upstream 556475 26416883 ~ 26417879 (-) False smdt1b
TU10045 other upstream 941502 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other upstream 941762 26802170 ~ 26802925 (-) False c1h19orf53

Expression Profile