RNA id: XM_043245059.1


Basic Information

Item Value
RNA id XM_043245059.1
length 2288
RNA type mRNA
GC content 0.53
exon number 28
gene id patl1
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25831324 ~ 25863787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttcttttttaataaacgcCGCACTCGCGCCGTGTGCGTGTCTTTAAGCTCGCGCGCGAGCGATCTCGTGCCGTGTCAAGCGCGCGCGGCGTCTCGCGCAGCAGAATCAAACGAGATCGTTTCAACACAGACACATGTTCCATTTCCAGGGTTTTGACGATGACTGCACCCTGGAGGAGGAAGGGTTGGTAGAGGAAGAAGATGAAATTGACCAGTTCAATGATGACACTTTTGGTGCAGGGGCCATCGATGATGATTGGCAGGAGGAGCATGCCCGCCTCGCAGAGCTTGACGCATGGTCCGAGGACGTCGTGCATGGAGCGGAGagcgcctcctcctcctcctcctccgttGACCTCCCTCCCGCTGCAGCAATGCCCACTCTTGGCCCTCCTCGACCCTCCTCTTCCCCGGCTTTACCTGGCATGGAGCGAACGGGAGGCGGTGACCTGGCGGAGTCGCTGACTCGGCTCATCTTGGGCTCGGATCCTGCTATCGCCGGAGTGGGCACCGCCAGGTCAGACAGATCCCGGCTTCCTCCGATGCTGTCCGGTCCGCCTCCTAAGCCCTCAGCATTGGCTGAACAGTCTTCTCTGCTGCTGAGCtaccaacagcagcagcagctcatgCACAGAGCGGCTCCTCTTCCACAGATAAACTCTCACAGTATTTGGGAGAACAATATGGGCTTCAGTCCTGTTAGTTCTGGACTAGTCACTCAAAAAGAGGACAAAACGCTTATGTCCATTATCAAAGAGGTGGGGCTTCCTAATCGTCCTCCTGCACTCAGCAGAGAAGAAGGGCGAGATTTGTCAGAAATTCCGCCTCCTCGCTCCTGCTCTCCTGTGATTGGAAGTCCACCTGTAAGGGCTGTACCTAGAACGCCTCCGAAACAGCCCATGAGTCAGGTTCTACAGTCAaatAATCACCCTTCAGCCATTCACATTGAGCCTCTGTGCCACGCGCTACCCCCTCCCTTCCCGCCTGTCCCCAACAACCTCCTCAGCATCACTAATTCACCGCTGTCTCATCCTCCGTtctctgctggtgttggtcctgTTCTGTCTCAGTTACAGAGAGCCCAACTTCTCAACTCTCAGGTTGGTCAGTTCTCACGTGGTCCAGCCCCATTATTACAGGGAAGTCTCGGGGGTTTCAGGCCGTTCTTCGGGCAGTCTGGTCCTAGAATGGGTCCCCATGGGCCACCTCTCGACCACGCCCCATCCTCACACAACACCACCCACCTCCACCCACAGCATCGCAGAATGCTCAACCAGAGGATGCAGAACAGAGGCTTGGGCGATCACGTCGGAGGGAGAGGTGTTGGAGAAAGGAAAAACAGAGATCCTTACAGCAATCTGATGACGCAAAGAGAGAAGGAATGGGTAGCGAGAATCCAAATGATGCAGCTTCAAAGCACCGATCCATATCTGGATGACTACTATTACCAGAATTACTATGAAAAAATGGAGAAGCGTCAAGAGCGGGACAGAGACAACAGGAAGGAGCACACCACCAAACTCATCACTCCTCAAGTGGCTAAACTGGAGCACACCTATCGGCcagTGCAGTTTGTCGCCTCGTTAGGAAAGCTCACCGTCTCCAGTGTGAACAATCCAAGGAAAATGATTGATGCCGTGGTGACAACTCGTAGTGATGATGAGgaaaaaagagaaaagcaagTGTGGAACAAAAGACGGCAAATCCTTTACACTGTGGAGAAGATGTACAGTCTATTATTAGAAGTGCAAGACTTTGAGAAGAAGTTCTTGCAGACCCCTGAGCACCAAAGAGATGCCCTGCTAGAACAGCATAAAACTCACACGCTGCAGCTCTACAACTCCCTCCGAGAAAAAGAGTGGGACGATCGAATGAGCGATGAGCAGTGCTTGATGATCATGTCTGTGCGTGTGCGTAAGCGCCTCATCTCCAGACTCCTCCCCTTCCTGCCGGAGACACAGGCTGCCACTGTTGTCATGGGAATAGCCAGGAACCTTCCAGCTCTGGCCAAGAAAGACAAACAAGACCAGGTACTGTGTTGGTTGGTAGAGCCAGTGGCGGCAGTAATCCAGTCCATGTCGAGTACCTCCCTCACTGATCTCCTTCAGGAGCTGCAGGGCAGTGAAGGACAGCTTCCCCTTGTGCTGCAAAATAAGTTTGGCGTGACGCTGCTCTATCTGATTCTGAGCGAAGGAGAGAGGATGCAGAGCTCCGATCCCAACTGTCAGCTCATGGATGATAACCGCTGCAGAGCACGTTTTATTTCCCCTGCAGCCATGCTTGTGTGA

Function

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0033962 P-body assembly biological_process
GO:0000932 P-body cellular_component
GO:0016605 PML body cellular_component
GO:0030014 CCR4-NOT complex cellular_component
GO:0016607 nuclear speck cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9691 lncRNA downstream 11108 25838851 ~ 25846530 (-) True G6636
TU9689 lncRNA downstream 12644 25835938 ~ 25844994 (-) True G6634
TU9628 lncRNA downstream 58365 25768907 ~ 25799273 (-) True G6594
TU9062 lncRNA downstream 120326 25736797 ~ 25737312 (-) True G6223
TU9030 lncRNA downstream 235893 25621434 ~ 25621745 (-) True G6201
TU9713 lncRNA upstream 54783 25918570 ~ 25918785 (-) True G6650
TU9715 lncRNA upstream 74634 25938421 ~ 25938851 (-) True G6652
TU9757 lncRNA upstream 200772 26064559 ~ 26066186 (-) True G6687
TU9739 lncRNA upstream 228222 26092009 ~ 26096257 (-) True G6670
TU9618 lncRNA upstream 267001 26130788 ~ 26135486 (-) True G6592
XM_043251139.1 mRNA downstream 43789 25809879 ~ 25813849 (-) True aptx
XM_043251149.1 mRNA downstream 44073 25809879 ~ 25813565 (-) False aptx
XM_043251183.1 mRNA downstream 130100 25716158 ~ 25727538 (-) True LOC122353214
XM_043251160.1 mRNA downstream 141934 25714930 ~ 25715704 (-) False LOC122353196
XM_043251204.1 mRNA downstream 143664 25706824 ~ 25713974 (-) True LOC122353232
XM_043237101.1 mRNA upstream 205389 26069176 ~ 26076862 (-) True il15
XM_043237109.1 mRNA upstream 205389 26069176 ~ 26076861 (-) False il15
XM_043237118.1 mRNA upstream 205389 26069176 ~ 26076857 (-) False il15
XM_043237092.1 mRNA upstream 205389 26069176 ~ 26076856 (-) False il15
XM_043235457.1 mRNA upstream 213478 26077265 ~ 26083184 (-) True znf330
TU9035 other downstream 141960 25714102 ~ 25715678 (-) True LOC122353196
TU9033 other downstream 141960 25714668 ~ 25715678 (-) False LOC122353196
TU9017 other downstream 302403 25551749 ~ 25555235 (-) False prokr1a
TU8940 other downstream 455283 25401314 ~ 25402355 (-) False G6135
TU8935 other downstream 457621 25398491 ~ 25400017 (-) False G6134
TU9622 other upstream 267001 26130788 ~ 26135486 (-) False G6592
TU9833 other upstream 553072 26416859 ~ 26417879 (-) False smdt1b
TU9834 other upstream 553096 26416883 ~ 26417879 (-) False smdt1b
TU10045 other upstream 938123 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other upstream 938383 26802170 ~ 26802925 (-) False c1h19orf53

Expression Profile