RNA id: TU9901



Basic Information


Item Value
RNA id TU9901
length 816
lncRNA type sense_over
GC content 0.33
exon number 2
gene id LOC122353745
representative False

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26454250 ~ 26523402 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAGCTTggtaaaaaatcattttattttcctgGCAAGGTAAAGAGAGAAAGGTGTGATTGTTTTTCTGTCTCAGTGCAGATTTCCACACGCAGCAATCGTTCTCCGCCTCGCCGTCCTTCCAACGGTCACTTCCTGTCTTTGCTTTCAGCTCGCTCTTATTTCAAATAGTCCGACCAACAAATAttgtcacaagaaaaaaaaaaaaagacgcatGATGAATCCAACAGTTTTATCAGTAAGTTTACCAGCAAATtccttacaaaaaaaataaaaatagcaaaacaaaaagtgcatGACAAGCGATAATCCAAATTTAAATTACGCGTTTTGCTCCGATAGAATGTAAATGTGAATTCGGTTCTATTTATCGAAGTAACCAAAAAATTAGCAATAGCagcaaaacttaaaaaaaaaaaaaaaaaatcaaaaattaacCTTATTGTTGTAAAACTATATTTGATATAGTTGTAATTTGTTGGATAAGCTGATTAAATCACTAAATACCAAATATCAATATGGCATCAATATTTATCGGtacaaatacattcatacacacacacacacacacacacacacacacacacacacacacacacacacacacaagatcaGTGATCTCTACTCCTACAAACATGCTCtaattatatttaactttttaaatcaaGCTGACAAAGATGAGCAGAGGCTGATCGAACTGAAAATGTGATTTACTTAAAGATGGCTTCCATAATAAAtctatttcacaaaaaaatggtAGTTAAAATGTATAGCTGGAAAGTTTAATTAAACCGACTAAAAGTGacaagtaaaagtttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9890 lncRNA downstream 7512 26444897 ~ 26446738 (-) True G6769
TU9850 lncRNA downstream 79627 26373662 ~ 26374623 (-) True G6749
TU9848 lncRNA downstream 84731 26368950 ~ 26369519 (-) True G6747
TU9841 lncRNA downstream 86647 26363672 ~ 26367603 (-) True G6741
TU9630 lncRNA downstream 263740 26189058 ~ 26190510 (-) True G6596
TU9934 lncRNA upstream 52925 26512392 ~ 26512958 (-) True G6799
TU9936 lncRNA upstream 54102 26513569 ~ 26513920 (-) True G6801
TU9973 lncRNA upstream 193775 26653242 ~ 26706828 (-) True G6827
TU9983 lncRNA upstream 229887 26689354 ~ 26690490 (-) True G6834
TU10056 lncRNA upstream 289256 26748723 ~ 26748956 (-) True G6873
XM_043238414.1 mRNA downstream 13726 26426671 ~ 26440524 (-) False rfx1b
XM_043238406.1 mRNA downstream 13726 26426671 ~ 26440524 (-) True rfx1b
XM_043253519.1 mRNA downstream 36353 26416865 ~ 26417897 (-) True smdt1b
XM_043222700.1 mRNA downstream 70558 26380117 ~ 26383692 (-) True si:ch211-133l11.10
XM_043219955.1 mRNA downstream 100052 26348591 ~ 26354198 (-) True taf5l
XM_043251823.1 mRNA upstream 17185 26476652 ~ 26481563 (-) False nthl1
XM_043251895.1 mRNA upstream 17185 26476652 ~ 26481563 (-) False nthl1
XM_043251758.1 mRNA upstream 17185 26476652 ~ 26481563 (-) True nthl1
XM_043240944.1 mRNA upstream 67423 26526890 ~ 26606252 (-) True pkd1a
XM_043234154.1 mRNA upstream 179717 26639184 ~ 26643244 (-) True wu:fj19g03
TU9833 other downstream 36371 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 36371 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 318764 26130788 ~ 26135486 (-) False G6592
TU9696 other downstream 593842 25859873 ~ 25860408 (-) False patl1
TU9033 other downstream 738572 25714668 ~ 25715678 (-) False LOC122353196
TU10045 other upstream 342443 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other upstream 342703 26802170 ~ 26802925 (-) False c1h19orf53
TU10183 other upstream 738438 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 781757 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 1295315 27754782 ~ 27939452 (-) False G7105

Expression Profile