RNA id: TU9973



Basic Information


Item Value
RNA id TU9973
length 440
lncRNA type sense_over
GC content 0.62
exon number 2
gene id G6827
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26653242 ~ 26706828 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGCACTGTGCTCTTCTACGGTGTACGCCTGGCTCTCTGCGAACGGAGCTCTGGGATTGGTCGGCCGCTCGTCGTCATGGTAACTCTGCGGCGTCGGCGGCTGAGGGGTGTCGTAATAGTTCTGGCCGGCGTCTGTGTTCCTCTGACTGGACGGGCGCAGGCACAGGTGCGTTTCCGGGATGGCGTGAAATAACAGCAGCACCCAGCCCTCGGTCACCAGCGCCACCGCTAAAGCAGGCTCGTCCCAGTCCTTCGCCACGGTCGTGATGGCGGCGTCGCCGTACAGATAGAGACCGAGCCAGGCCACCCAGAGCAGCAGCGAGGACAGACACGAGAGGAAAAGCCAGACAGCGTTGCACCTCCACTTCATCCTCTTCCGGCTCGACTCCTCTCTGTTGCTTCCTCCGCACAcacacacagacacacacacacacacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9899 lncRNA downstream 129840 26457806 ~ 26523402 (-) False LOC122353745
TU9936 lncRNA downstream 139322 26513569 ~ 26513920 (-) True G6801
TU9934 lncRNA downstream 140284 26512392 ~ 26512958 (-) True G6799
TU9901 lncRNA downstream 193775 26454250 ~ 26459467 (-) False LOC122353745
TU9890 lncRNA downstream 206504 26444897 ~ 26446738 (-) True G6769
TU10056 lncRNA upstream 41895 26748723 ~ 26748956 (-) True G6873
TU10058 lncRNA upstream 47904 26754732 ~ 26758292 (-) True G6874
TU10059 lncRNA upstream 50370 26757198 ~ 26758292 (-) False G6874
TU10053 lncRNA upstream 53176 26760004 ~ 26764480 (-) True G6870
TU10026 lncRNA upstream 103120 26809948 ~ 26865737 (-) False G6856
XM_043234154.1 mRNA downstream 9998 26639184 ~ 26643244 (-) True wu:fj19g03
XM_043234189.1 mRNA downstream 11169 26639184 ~ 26642073 (-) False wu:fj19g03
XM_043240944.1 mRNA downstream 46990 26526890 ~ 26606252 (-) True pkd1a
XM_043251823.1 mRNA downstream 171679 26476652 ~ 26481563 (-) False nthl1
XM_043251895.1 mRNA downstream 171679 26476652 ~ 26481563 (-) False nthl1
XM_043239620.1 mRNA upstream 6018 26712846 ~ 26717701 (-) True exosc1
XM_043247910.1 mRNA upstream 11364 26718192 ~ 26721829 (-) True pgam1b
XM_043237777.1 mRNA upstream 15691 26722519 ~ 26727432 (-) True cdc25d
XM_043237783.1 mRNA upstream 15691 26722519 ~ 26727427 (-) False cdc25d
XM_043237802.1 mRNA upstream 27644 26734472 ~ 26739040 (-) True avpi1
TU9833 other downstream 235363 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 235363 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 517756 26130788 ~ 26135486 (-) False G6592
TU9696 other downstream 792834 25859873 ~ 25860408 (-) False patl1
TU9033 other downstream 937564 25714668 ~ 25715678 (-) False LOC122353196
TU10045 other upstream 95082 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other upstream 95342 26802170 ~ 26802925 (-) False c1h19orf53
TU10183 other upstream 491077 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 534396 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 1047954 27754782 ~ 27939452 (-) False G7105

Expression Profile