RNA id: XM_043253963.1


Basic Information

Item Value
RNA id XM_043253963.1
length 8173
RNA type mRNA
GC content 0.52
exon number 47
gene id sdk1b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7318338 ~ 7485657 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCATTCAAAGCCTTTTAAAGAAGTGGCAATTTTACTTGCGTCCGACTAAACTTTGAATCGCCTGACAGGAGCTTtgttgcaagttttttttttttttttttatcttcggTCCGGGCAGCAGGTGTTCGGTGACCGCCACACAGCTCGGTTCTCTTCGTTTGATGAATTCATTCAGCCAACCCGCACCGCGAGGACGTTAGgtgtttttttcatttacgaGGAATTTATTCTGGACGTTATTCGTTCTTTTGGCGTCTCGGTTAACCTGTTGGATACAAAAAGTCTCATGCGTAACCTTACACTTaactagattaaaaaaaagcaacgtTTCCCTCGGACCGCTCCAAGGGGATAAAGACACATCTAATGAGCACCGATATGGATTGTAAGGGATTCTTCAAGAGTCGCTGAATGCCGTGGAAATGCTCGAAATGATCGGGTAGATAATCCGACTGCGAATACGTCAAAACAACGTGGCTTTACAGGAGATATTGGCGCTCTAAGCGGATAAATTAAATCCGGTACACTCAAACGTATTAATACTTAACTGGAATCAATACTGAAACATCATGAGCCGTCTCGGGACACAGAAGAGCGACTCGCGATTAGTGGAGGGATGTTCGCGGAGCGTATCGTTAATTTTGGATCAGCGCACGGAGACTCGGTCCTTTTGGTTCGAAGGTCTCGTTTTTTTCGCCGCCGAATGCGCGGACGAGAGTGAGAGCTTCCCGAAAGCCGCGAGACATGAAAGTGAAGGGACCGGGAAAGTCGCGGACTCGGAGCTGAACTCTCCCGCGTGCGGGATGAATGAGAATCGCCTCGTAAATGCGGCGAAGCGGAGCGCGCACTTTCGGCGTTTCTCACAAACCTCCACATCTGCCGAGGTTATAGATTCCAGCTTTAGCGGGGGTCAGAACCCACTTACCAAGGGCAAAGTTAAAAGGATTATTCACCGCCAAGgaaatacacagaaggtgatgTCGGGGAAAGCGAAGTGCGGGATGTGGGGTTGGATTTTTGCCCTTGTGTTCCTCTGGAATACCCACATGTTGCGCGCTCAAGACATTGCTCCATACTTCAAAACCGAGGCAGGGGGTGCTCAGACACACCTGGAGGGGAACAGACTCGTGCTCACCTGTCTGGCTGAGGGCAGCTGGCCGCTGGAGTTCAAATGGAAGAGAAACCGCACAGATATCACTGAATACACACCAGAGTACAGGTACACGATTACGTCGTTAAAGCGCGAGGACGCGGGTGTATATCAGTGCGCGGTGAGGAACAGGATGGGAGCGCTGATCCAGACGAGGGCCGATGTTCGCGTGGCTTACATGGATAACTTTGCTGAACTGGAACAGAGGAAAACGGTCTCTCAGGGAAGAGCTGCTGTCCTGAATCCTCCCGCTGTGACCAGTTACCCTCGCCCTCAGGTCACATGGTTCAGAGACGGCTTCAAGATCATTCCTAACCATCGAGTAGCAATAACACTGGACAATCAGCTTGTGGTTTTGGGGACAGCGGCAGCAGATGCGGGTCGGTATTATGTTCAGGCCGTTAACGAACGTAACGGGGAAAACAAAACCAGCCCGTCCATTTACCTGAGTATAGCAATAAACAAGAGGAATCGTGGTTCCCTTGACGTTATTGCCCCGGCTGAATTGGTTGCCCCGGTGATAGTGATTGCACCTAAGAACACATCAGTGGTTGCCGGGGCGAGTGAGGCTACTCTTGAGTGCGTTGCTAATGCAAGaTCTCTTGACAGGCTGCAGGTGTTCTGGAAgcgtaatggggtgagactaaCAGCAGGAGTGGACTCGTTCGGTCGCAGGCTGGTCATCAGTAACCCCACCTCAGCGGACGTTGGTCTGTACATGTGTGAGGCTGCGCTCAGAAACAGCAGTCAAAAGAGCACAGAGGCCAAAGCGTACCTCTCCGTGCTGGAGCCTCCGTACTTCACCTCAAAACCGAAGAGGTCGGTGATAACAGAAGTTGAGAAAATCGTGGAGCTTCACTGTCAGGCCAAAGGGGTTCCCACACCGAAGCTGGAATGGTTCAAAGATGCCGTCCCCCTCTCCACACTGAACAACCCTCGATACAAACTCACATCCTCCTCGATGGTTCTGCAAGTGCGGAAAATTCAGCCGGACGATGCTGGAATTTTCCAGTGCTTCGCTGAAAACACAGCCGGAGAAATCCAGGCATATACCAACTTGGTCGTCACAAGTGTGTCGCCATCTTTCACCACGCCCCCTTCTGACATCACTGTGACTGACGGAACGTCAGCCGTCTTCACCTGTGAGACATCCGGTGCCCCCAAACCTGCCATTGTTTGGAGGAAAGGTTCTCAGGTGTTAGCTAGCGGGTCGGTGCAGATGCCTCGTTTCACGCTGCTGGAGTCCGGAGGCTTACAGATACTCCCCATAATGCCGAGCGACGCAGGAAACTATACGTGCTTGGCATCTAACTCTGAGGGACTGGTCAACGCAACCGTGGCCCTGACAGTTTTGAgTCGAACCTTCATTTCAACACCCCCTGAGGATCAGCGTGTCATCAAGGGAACTACCGCTGTGCTGAACTGCGCCGCAACCCACGACCCCAGAGTCACCGTCAGATATGCATGGAAAAAAGGAACCAAGCCGCTGAGCGTGTCAACTGGTGGGCGAGTGTCAATGAGGGAAGGTTCTCTCCACATCAGCCAGACGTGGTCCGGAGACATCGGTGACTACACCTGCAGGGTCATATCACCTGCTGGAAACGACTCGAAAACCGCCCGACTGGAAGTCATagaactTCCCCATTCTCCACGTAACCTGCAGGTGGCTTTAAATGAGACAGACAGCAGAACGGTTCTTCTATCATGGGTCCGGCCCTTTGATGGAAACAGTCCTCTCCTGCGCTACATCATTGAGCTTTCTGAAaacaATTCTCCATGGAAGGTCTACATGGATGATGTTAGTCCAGCACTAACTAATTTGTTAGTAATTGGTTTAACACCAGCAAGAACATATCAGTTCAGAGTGTGTGCTGTCAATCAAGTGGGACGTGGACAGTACAGCGCGGAAACCAACAGGCTGATGCTGCGCGAGGAACCACCCAGCGCGCCTCCAAAAAACATTGTGGCTAGTGGCCGTACCAACCAGAGCATCATGGTCCAGTGGCAGCCACCCCCAGAACCACAGCTCAATGGAGTCCTGAGGGGCTATGTGCTCAGGTACAGATTGGCGGGTCTGCCTGGTGAGTTTCAGCTGAAGAACATCACCAGTGCAGAGATTAATTACTGTCTGATTGGAGAGCTCATCATCTGGACGCAGTATGAGATCCAAGTGGCTGCCTACACTGGAGCGGGCCTGGGGGTGTACAGCCAGTCTGTCACTGAGTACACGCTGCAAGGAGTCCCCACAGCGCCCCCTCAAGATGTGGGTGCCATCGCTCtcaactccaccaccatcaaaTTCACCTGGACACCACCACCCCAGCAGTTCATCAACGGCATCAACCAGGGATACAagCTGCTGGTGTGGCCCGAACACTGTCCGGAATGCATTACCATGGTGACCATTGCCCCCGAGTTCCACGGGTCACGTCACTATGGTTACGTTAGCAATTTAAGAAAGTTCACGTGGTATGAGACGGCAGTGCTGTGCTTTACCACGCCTGGCGATGGCCCAGCTAGCACGTCAGAGCTCATCCAGACGCATGCTGACAAACCAGGCCCGGTGACTCAACTAAGCTTCACTGAGATCTTGGACACGTCTCTGAGGATCAGCTGGCAGGAACCGGAAGACAAGAACGGCATTATCACAGGTTACGTCTTGTGTTGGGAGGAGGCCAGTCAGAACGAAACCCGCGTATCTCAGACTTTGTCCAATTCGACGCTGACGTACAAAGTGACCGGGCTCACTTCGCTCACCACATACACTCTGCAGGTGGCTGCGGTGACACAGGCCGGCACCGGTGCTGCCACCTCGTCGAGCATCTCGACAGGACTGCCGCCAGAGCTTCCTGGTGCACCCTCCAATCTGGTCATCTCCAACATCAGCCCTCGCTCCGCTTCCATAAAGTTCCACCCCGGCAGTGACGGCAAAACTGCCATCTCCAAATGGATCATAGAAGGACAGGTGGGGACTGTGGGTGAGGACGAGGAGTGGACGCTTCTGTACGAGATGGACAGTCCTCCAGCCTCAGACACTCTGGAGATTCCCAATCTCATCCCATTTACTCAGTACAGGTTCAGGATGAAGCAGGTGAacattgtgggttcgagtcccttCAGTCAGCCTTCTCGTACGATGCAGACCCTGCAGTCCAACCCAGATGCGTCCCCGATGAATCTCAAAGTGTTTTCTGCTAGTGAAACCAGCCTGAGGATTCGCTGGGAGCCGCTTCCAGAGGCAGCTTATAACGGAAATCCTGAAAGCGTGGGTTACCGAGTACGTGCGCAGAGAGCAGACGGGCTCGGGCAGCCCCGGATGGAGACGGTTTCTGAGCGCCTGTCTCTGGAAGCGACGGTGGAGGGACTTGAGGAGTGGACGGAGTACGAGCTCAGCATTCAGGCCTTCAATGGCATCGGGCCTGGACCCTGGAGCAGTCCTGTGCCGGGCAAAACTAAAGAGTCAGTTCCCTCTGGTGCCCCAGAAAATGTGAGCGCAGAGGCAATGAGCTCCACGAGTATATTGGTCACCTGGGGTTCGGTCCCTGAACACCAGAAGAATGGACACATCCTTGGTTACAAGGTTTTGTACAAAGAAAAAGATTCGGAGCGGGCCCCCCAGGTCCAGCTGGTGAACGGGAACCAGACTCACttgctgcttttaaaaaaccTTAGCAAGTTCATCTTGTATGAGGTTCAGGTGCTCGCTTTCACACGTGTTGGCGACGGACCACCCAGCCTGCCCCCCACAGCCGAGAGAACCAAGGATGATGTTCCCGGTCCACCTGTCAGGTTGGTGTTTCCAGAGGTGCGTCTCACGTCTGTCAGGGTTGTCTGGCAACCTCCCTCGAAGCCAAACGGCATCATTATGGGTTATCAAATTTCTTACCGTTTGGATATCAACGACCCCAACAAGTTCACAACAGTTGAGGTGGGATCCAACGCACGTCAGTTCACAGTGACAGGACTGATTCCAGAATCGGCGTATGTTTTCCAAATCACAGCGCGCACTCAAAAGGGCTGGGGACCCTCGGAGGAGGCCATCGTCATAACGACAGAAAAAAGAGAGAAGCCACAGCCCCCTCGACGACTCGCCGTCCCTCAGAAAGGGGTGGAGTCTCATAAGCTGCGACTTCATTGGACGGCGGGGGGAGACGGCTCTTCTCCAGTGCGCTACTTCACCCTGCAGACATTAGAGCTGCCGGACGGCGAGTGGAAGATCCACACATCCTCCATCGGTCATAATAACACCTCCTGGGAGGTGGATAGGCTGAAGCCATACACCtcttacaaatttaaaatgatggcCACAAATGATGTGGGAGACAGTGCCTTCAGCAAAGAAACCGAGCCAGTTACCACTCTGCAAGATGTGCCAGATGAAGCGCCTGTCATTTTGAACATCAAACCTTCAACCACAACATCTGTGATTGTCCAGTGGCAGCCGCCTGCCGAGGGAACTGTCAATGGGATTCTTGTGGGATATCGCGTGTATTACCGGGAACTTCCACGTGAAAACAGTCCAGATGAGCCAAAGACAGAGACCAACCAGTCAACAATCAGTCCAGAGTTCAAAGCCAAGAGCACTTTTAAGACAGTGAGCAGCCCTTCATTAACAGAATTTGAATTAACGCAGCTCAGCAAATACAGAAGATACACGATTGTCATGACAGCATTTAACGTTGTTGGAGAGAGCCCTTCAAGTGAACCTGTTGAGGTGTTTGTGGGAGAAGCGGCTCCTTCAGTGGCTCCTCAGAACATACAGGTGAAATCCGTGTCCTCCAGTCAGCTGGATGTAGAGTGGCAGCCTCCACCCGTCGAAacacaaaatggaaatattcaaGGATACAAGATCCATTACTGGGAAAAGAACAGGCAGAATGAGACGGAAAAGGAGCTAGTTTTGTTTGTTCCAGATACATCCGTGCACCTGAGGAACCTGACATCCTACACCAACTACCTTGTGCAACTGTCTGCATTTAACACGGCGGGGGACGGGCCGCTCAGTGCAGCCCGTGAAGGACGCACCCTGCAGGCTGCTCCTGGAGCACCCGGCAAGGTGGTGTTTTCAGAGGTGACGGGAAGCTCTCTCAATGTGTCATGGGGAGCTCCTCTGCAGCCCAATGGAGTGGTGGAAGGCTACAGAGTGCTCTATGAGCCCACCGCACCAGTTCATGGTGTCAGTAAGACAGTTACAGTGGAGATCAAGGGGAACTGGCAACGCTGGCTGAAGGTCCGTGACCTGATGAGGGGTGTCATCTATCGCTTCAAGGTTCAAGCCAGAACTATTAGTTACGGACCTGAACTGGAAGCCAATATCACCGCAGGACCAGTGGAAGGATCCCCCGGTTCGCCCTTGCAGACCTCAGTCACAAAGTCCGCAGCAGCTTTGACGCTTCATTGGTCAGAGGGCGCAGAAGGGGCGGGGCCTGTGACAGGATATGTCATCGAGGCTCGTCCGTCAGATGAAGGATTATGGGATACGTTTGTCAAGCATCTCCCACCTGGCAGCTTCTCGTACACCATCAGCCTGGACCGCCTACGCTCAGGTGTAGCCTATGAATTCCGTGTCATCGCAGTCAATCGTTTCGGTTACGGCGATCCCAGTCCGCCTTCCACCGCGATGTCTGCTCTCTCTGAAACACCTTTCTACGAAGAGTGGTGGTTCCTGATCGTCATGGCTTTGATCagtctcattttcattctgaTGGTTGTGTTCGGCTTGCTCCTGTTGGGACAGAACAAGAAGTACAGGAGCTGTGGAACAGGAAAACACATTACTACAGTAGAGGAGTCTGTAACTCTGGATAATGGCGGCTTCACGGCTTTAGAGCTTAACAGCAGACATCTGAACGTGAAGAGCTCTTTCCTAAAGAAAAATGGAACGAGATCCCCTCCACGGCCTAGTCCAGGGGGTCTGCACTACTCTGATGAAGACATCTGCAACAACTACAACGGGGCCGTTTTAACAGAGAGCACCACGCTTACAGAGAAACCCACCGAGCTGTCAGAGTCAGAGGTCAGCGACAGCGACTACGAAGACGAGCAGCCCAAGCACTCGTTCGTAAATCACTACATGAGCGACCCCACTTACTACAACTCGTGGAAGCGGCAGCCCAAAGGCGTGAAGACCGGAGGAGGGTACGAGGAATGTGCCATGACGGATGCAGAGGGGGGATATTATCAGACTGTGGTGACCCAGCACAGTGTAGGGGGCGTCTACACCCCCACGGGGCAACCCGCACCAGGAACACGCACTCCGGTTACCGGCTTTTCCTCATTTGTCTAATAAACCAATGACGAAGAGGCTGGAAGACTGGAAGTTGAGCCCTACATCGGGACGAATCAAACTGTTGTGCTGGTTATTACGGGAAAGAATGCCGTAAAAGTTTCTCATTTCCcccaaaatgtgtattttaggcCTCCTCTCTTCAAGGAAGGGAGGAGAGCATTGAAGTATCTTATTGTTAACGTGTTAATGATTTTGGGGTGGATTTTGGCAGATTAACCGTGACCCAGAAGAAGCAGAGACATTGCACTGTGAGACTCTTTAGTAAGAGGTGGTATTCATTTCAAAGACTCAAAGACCCTCAAAGACGGATGAAGGAAATTCCTTTGTTATGAATTCCCGTTCCATAGCAACCTTCCGGGATTAGCCGTGATGTGTGGGCAAACGCACGCTCGAGCGATTCACCGAATCTCGCTCTGATCTCTGAGACTCTAATTGAAGTTGAAACATCAGCGGAAACTTGTACAGTGTGTGGTAGACTGGAACAACaatgtgtattgtgtgtggTTTATTTTCACGTCGGGGACATTATGGACAAAAAGCAGCACTGAAAATACTGCCTTTGCACACGTATTGCTCTCTTAAACCAAAAGAGCGATGCTTCAAGCGGGAAAAGAAAATGCGTGCTCGCAGCAGACCGAGAGTTTTCTTAGGTTAGCAATACTGTATGTAAAATacgctgtatgtgtgtatatttttaggATCAATTTTGTACAAAAAGGAAACGTTTTTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428 lncRNA downstream 2020 7315910 ~ 7316318 (-) True G1663
TU2425 lncRNA downstream 5440 7312252 ~ 7312898 (-) True G1660
XR_006250485.1 lncRNA downstream 20193 7297494 ~ 7298145 (-) True LOC122341717
TU2397 lncRNA downstream 148316 7167577 ~ 7170022 (-) True G1642
TU2398 lncRNA downstream 153617 7162323 ~ 7164721 (-) False G1642
TU2585 lncRNA upstream 170421 7656078 ~ 7660532 (-) True G1781
TU2621 lncRNA upstream 257838 7743495 ~ 7797446 (-) True G1809
TU2672 lncRNA upstream 467556 7953213 ~ 7984303 (-) False G1845
TU2673 lncRNA upstream 495114 7980771 ~ 7984303 (-) True G1845
TU2691 lncRNA upstream 589518 8075175 ~ 8077330 (-) False LOC122341751
XM_043247565.1 mRNA downstream 7117 7299948 ~ 7311221 (-) False knl1
XM_043247575.1 mRNA downstream 7120 7299948 ~ 7311218 (-) False knl1
XM_043247558.1 mRNA downstream 7120 7299948 ~ 7311218 (-) True knl1
XM_043236048.1 mRNA downstream 22652 7222031 ~ 7295686 (-) False dmd
XM_043236052.1 mRNA downstream 79825 7204004 ~ 7238513 (-) False dmd
XM_043244069.1 mRNA upstream 41428 7527085 ~ 7529413 (-) True LOC122348313
XM_043246607.1 mRNA upstream 47592 7533249 ~ 7540360 (-) False brat1
XM_043246615.1 mRNA upstream 47592 7533249 ~ 7540247 (-) True brat1
XM_043246624.1 mRNA upstream 47592 7533249 ~ 7539761 (-) False brat1
XM_043234143.1 mRNA upstream 88071 7573728 ~ 7577469 (-) True zmp:0000001069
XR_006250550.1 other downstream 22659 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 22705 7205584 ~ 7295633 (-) False dmd
TU2401 other downstream 148917 7162323 ~ 7169421 (-) False G1642
XR_006250919.1 other downstream 190931 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 776955 6539528 ~ 6541383 (-) False LOC122342514
TU2800 other upstream 1117643 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 1293561 8779218 ~ 8782587 (-) False LOC122351550
TU2978 other upstream 1309414 8795071 ~ 8798355 (-) False LOC122351550
TU3335 other upstream 2913530 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 3256265 10741922 ~ 10745896 (-) False LOC122347930

Expression Profile