RNA id: XM_043223173.1


Basic Information

Item Value
RNA id XM_043223173.1
length 1512
RNA type mRNA
GC content 0.56
exon number 13
gene id si:ch211-286b5.4
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26912603 ~ 26917615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTGCTGGTAAACAGACTGATGAGATGATTGAAGGAGAAACCTGCTGGTGCTTGATTAAAGGAACCAGATTCACTTGAGCTCTGTAACAGTCAGTGTGAACCTTTTCTGCTCTGTATCTTCAGGGTCTGGGTTTATGGCACACAAACGGGTTGCAAGATCCCCAGGATCCCAGAGGAGAGCTCCGGACtgctcagagatcCTGAGCTCGGTGATTCTGTGTCCTGATGAAAACACTCGGAGCTTCTCACACGGGATCTCCAGAGACCTCTCCAGCTCTCTACAGGAGCAGCTTCTAGAGAAGGACCTCCACATCTCCAGACTGCAAGATGCTCTGAGCTCTGAAAGAGAAAAGtgCGCGCGGCTCCAGGTCCGCTGTCACCAGCAGGGAGCGGAGCTCAGACGTCGAGAGCAGCACATCCAGCGCATGAGAGAGAGACTCACAGATAGACACAGACCCCGCGGCGCCTCCATGGAGATGATGAACGTTCTGCCGAAGCGGACCGGACGGAGAGAGCCTGGCTTCAAGAGCGCAAGGGCTGATGGGAGGACGGAGGAAGCTCTGCGTCTGCTGTTGGACCGGAGGGAAGCCGAGCTCAGGGAAGCCATGAAGCTGCGACACGGCCTCACCACACTACTGCACATGCTCAGAAATAACATGGAACAGGCGAGAAACACAACCacgCTACAAGACGTCAGCAATGCAGAACCAGAAGAGGAGACGGACGACGACGCTCTGGTCCAATCGGAGCGGTGCCTCGGTGATCATGTGACCGGAGGTGTGGTCCAGGAGTGGACCCAAGTCCAGAAGAGACTCAGGGAGCTCGTGTCAAAGAGTGCTTGTGCTCGGGGAACTGACCAGGAGAAGCTGCTGGCTCGTctggaggaggagctggagCAGAGCAGACGGCTGATCCGAGCGCAGCAGCACTTGCTGCAGgacagTGTGAGCGCGCCCCTCCCCGCCGTGCTGGTGGACTGCTACTATCTGGAGGAGTGGGAGCGGCTGCAGGGCCACTGGGAGGAGCTTAACAGGCAGAGGCGGAGCTTCCAGCAAGAGAGGCAGGCCTTCACTGAAGCTGCTATCCGATTGGGTCACGAGAGATGTGAGTTTGAGCAGCAGAAGGCGTCCCGTTTGAAGGCAGACTTCTTCGGTCTTTCTCCTGTCAAGAAGACCTCTCAGTGGAACAGGAGAGAAAGCACAGCGCTCAGCGAcctacgtgcagCTGTACCAGAgcagctctctctgtctccctgtACCACGCCGTCATCtgaggggtcagaggtcacgccGGGGTCCCGTCTGAACACGGTCATGACCCCCAACACCCCTGAGCTGTACTCGGCTCTTAAACTTCCCTACTACAGGTCAGAGCGGATGCTTCAGTCGCCTGATGAGTGCAACCCGGACTGGCCCTTTTAGTTCACACGCTTCAGTACCATGAGCTGgaaataatgttgttgttgtttttgtattttcaaagatgcatttgaaaaaataaaagtatgccAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10026 lncRNA downstream 46866 26809948 ~ 26865737 (-) False G6856
TU10030 lncRNA downstream 46866 26863103 ~ 26865737 (-) True G6856
TU10053 lncRNA downstream 148123 26760004 ~ 26764480 (-) True G6870
TU10058 lncRNA downstream 154311 26754732 ~ 26758292 (-) True G6874
TU10071 lncRNA upstream 64 26917679 ~ 26919998 (-) False si:ch211-286b5.5
TU10072 lncRNA upstream 64 26917679 ~ 26920034 (-) False si:ch211-286b5.5
TU10082 lncRNA upstream 15517 26933132 ~ 26942207 (-) True G6887
TU10127 lncRNA upstream 66929 26984544 ~ 26985660 (-) False LOC122349164
TU10130 lncRNA upstream 76823 26994438 ~ 26994699 (-) True G6923
XM_043224264.1 mRNA downstream 787 26911058 ~ 26911816 (-) True nanos3
XM_043224628.1 mRNA downstream 5591 26893812 ~ 26907012 (-) True cc2d1a
XM_043223872.1 mRNA downstream 21321 26879067 ~ 26891282 (-) True mri1
XM_043223543.1 mRNA downstream 34453 26872656 ~ 26878150 (-) False zgc:158803
XM_043223471.1 mRNA downstream 34454 26872656 ~ 26878149 (-) True zgc:158803
XM_043224501.1 mRNA upstream 54 26917669 ~ 26920029 (-) True si:ch211-286b5.5
XM_043245477.1 mRNA upstream 62690 26980305 ~ 26983587 (-) True LOC122349409
XM_043245108.1 mRNA upstream 67744 26985359 ~ 26992582 (-) True LOC122349164
XM_043238097.1 mRNA upstream 96862 27014477 ~ 27024300 (-) True LOC122344082
XM_043238115.1 mRNA upstream 134112 27051727 ~ 27054595 (-) True dnajb1b
TU10045 other downstream 109678 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 109678 26802170 ~ 26802925 (-) False c1h19orf53
TU9833 other downstream 494724 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 494724 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 777117 26130788 ~ 26135486 (-) False G6592
TU10183 other upstream 280290 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 323609 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 837167 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 837167 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 1157033 28074648 ~ 28076444 (-) False LOC122349330

Expression Profile