RNA id: XM_043224628.1


Basic Information

Item Value
RNA id XM_043224628.1
length 3579
RNA type mRNA
GC content 0.55
exon number 29
gene id cc2d1a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26893812 ~ 26907012 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGCTAGACTGACAGCAGTGCAGATTGGTGTTTATCTCTGTGTTTGTGACACTCTGGTGCAGAGGTTTAATGTCAGGCGGCTCGTTTTTCACGACGGAACATATATTTATCACATAACCCGCCCTCGGAGGAACATATGATCAAGGTTTGAAGGGCCTGTGGAGAAAATGAGCCGAAGCCGGAACCCTCCGCAGAAGGGCCAGGGGGCCGCCAGGGCCAAACAGATGGGACTGCTGCTGGACTTGGCTCCTGACGGCGGGCCGGATGACTCTGGAGGAAATGATGAGGAGCTAGAGGCGGAGCTTCTGGCATTGATGGGAGGAGGAGGGAGGGGCGGGGCAGCGGGCAAGAGGCCTGGAGGGAAGGCTCCGGTGCCCATGGAGGACATCGAGCGGATGGCAGCGCTCTGCATGAAAGATCTGGACGAGGACGGAGACGACGATGGCGATTTGGAGAACGACGCTGATCTCTTGGCCGAGTTGAACGAGGTGCTGGAAGACGACGAGGAGCAAGTGGTCAGGAAACCTCCTCCATCTCCAGTGCCCCCTCAACGCTCGAACGCAGCGCCCGCGTCCCAGAATGCATCCGCCAGCCTGGAGGCTCGCCTGCAGGAGCGTTTGGACATGTACCAAACGGCCATCGCCAACGCCAAGGCCGCGGGGGAAACCAGCAAAGCGCGCAGATACGACCGCGGACTGAAGactCTGCAGTCTATGCTGACTTCAGTTAAAAAGGGGAAGCCCATCAATGAAGATGAGATTCCTCCTCCTGTGGCCACGGGTGGAAAGCCCTCCGCTGATCCGCAGGCCGAGCCAATCACAGAGCGAGAAAAACCTGCTCCAGCAAACACTCCACCGCAGACGGCCAACGTCAAGCCACCCGCTCCATCTAAACCTCAGCTGCTTCAGCCTCCGCCACAGAGAGAGACGGCCGTGACGCCCGACACACCCGCCATCTCACCCCTCACACCCGGCCAGCCCAGCACACgtgtttcagagctcAAAGCGAGTGTGttaaacagacagagagagtaTAAGCTAGCAGCCTTGAAGGCCAAGCAAAGCGGAAACACTGAGCAAGCCAAACAACTCTATCAAGTGTCCAAGAGATTAGACTCGGTGGTGGAGAGCGTTGACCGAGGGGAGTTTGTGGACATCGGCTCGCTGCCGCCCCCTCCTGGAGAGGTTGAAGTGGCCCGCTCTAACCCTCCCCAGCAGTCCTCTAAACCAGCCGCCCCTCCTGCTGCCCCAGACGCagctctcTCTGCTCCCCGGAGCGTCGCCGAGGCCTTACAGCAGCGCATGGATAAATATATAGAAGCCTCAGAAAGTGCTAAGAGCAAAGGAGACGAGCGCAAAGCGCGCATGCACCAGCGCATAGTGAAGCAATATCAAGACGCCATTAAAGCTCACAAAGCAGGACGGCCTGTGAACTTGGCAGAACTTCCTGTTCCACCAGGGTGTCCTCCGCTGCAGGGCACTGAAGGAGGCGAGCAGAATTTCATCGGCGTCCTGGAGACAGCCATGAAGCTGGCCAATCAGGACGCAGACGCCGACGCAGACGAAGAACCACAGAAGgcatCAGCTCAGCCTGCCGCTCAGAAACCCAGAGCTCCCGCTCCCCCCAAAGCCGCAGGGACGCCCACCGGCTCCACCAGCGCCCCCAAACTAGCAGGCAAAGCCCAGCAGCAGCTGGATTTCCTGACGACGCGCAGGCAGCAGTTCATCAAGGCCGCGCTGCGCTCCAAGGAGATGAAGGACATGCAGGGAGCCGCTCAGCACCTGAGGAACGCTAAAGGCCTCGAGCAAATGATCGCCGCCGCCAAGGCCGGACTTCCTGTTGACATCACCAAGGTGCCGGCCGCTCCGGTCAGCGAGGATGACTACAGACTGTCTCATTCCCGCTCGTCCGCTCTCTCTCCTCGCTCCTCGGAGCAGTACACTCAGCTGATGGCTCAGCTCAAACAGCAGCACGAGAAATGCCTGGCGTACTCGCAGCAGTTCACTCATATGGGCAGCGTAGCAGAAACCGCAAGgtttgaGAAGCTGGCTGAGGAATGCATGAGTAACATTGAAGTGCTGAAGAAAGCTCACGCTAAAGGAAGATCAGTTCCCAAATACCACACAGAGGAGCGCACCTTCAACACCGTCAAGATCTTTCCTAACCTGACGTCCAATGACATGGTGCTGACCGTCGTGAAAGGAATCAACCTGCCTGCTcctccagGAGTTTCCGCCAACGATCTGGATGCGAGCGTGCGCTTTGAGCTCCCGTTCCCCAGCGCGGAAGAAGCTCAGAGAGACAAAACCAGCACTGTGAGAAACACCAACTgtccagAGTTTAAGGAGCAGTTCAAGCTGAACATCAAGCGAGATCACAGAGGCTTTAAGAGAGTGGTACAGGCCAAAGGCATCAAGTTTGAAGTCGTACACAAAGGaGGTCTCTTCAAGACAGATAAAGTGGTGGGAAGTGCTCAGCTGAAGCTAGAAGCTCTTGAGAACCAGTGTGAGATCAGAGAGATCATCGACGTGCTGGACGGACGCAAGGCGACCGGAGGGAAGCTGGAGGTGCGAGTGAAGATCCGCGAGCCGCTGTCTGGGCTTCAGCTGCAGCCGGTGACGGAGAAGTGGCTCGTCATCGACCCGCTCACGCCTTCCCCGGAGAAGGACCGAGAGCGGGAGAAAGACGGCCGCCGAGAGAAAGACGGAGACCGAGAGAAAAGCAGGGAAAAGGAACGGGCTCCCTCCCCGAGATCCCACCCCAGGAACGATCACGACAGGAACCCCAAACCCAGCTCGTCTCCTCCGCAGCACAAGCTGCACAGCTTCAGCCTGCTTCACCACGACAAGGAGAGGCTGGAGTGGAAGATCGCAGACTATAAGAAGAACAGGCGAGACCCGTCGGAGCTGATCAAGCAGCACATGGACGTCTGTCAGCGACTGCAGTGGCAGAAATCCTTCCTGGAGAAACATCCGGCCGCGCTGACAGAATATGAAAATGTGCTGCGGAAGTTCGTTCACGGTCTGTCAGATTCAGTCAAAATGTTTTCCAGCCAAGGCAACAggGATGCAGCGAAAGACGCCCTCGGCCGACTGAAGATGGTGGAGAACGAGctgGAGTCAGTCAGGAAAAAACGGGCCGTCAGAGAGTGAAGACACGACTGTCTGCTGCAAAACTCTTCACACTTCTCAAATCATGGGAATAGAAATGAATCGTGACAGATATGAAGGAGCTGCAGAGGGaaacgctacacacacacacacttcattacTCCATGATCCAAGGAGACACGTCTGAATGTTACGAGCGAGATCAAACTCATCTCACctgatgcaaaaataaacatcaaacaCTAAAGAGGAAATCTCACGAAACCCATCAGCGACATGATCGCATTTATTTCGAcaaaaaatattagttaaataCTTTAGGGCCGTGAAGATGTTTTTGCTGTGAGATTTGGCgagtaaaaatatacacattcttagtctaatatatatatatatatatatatatatatatatataataaaaaataagtgcattaatttgatatataatagGGCAATagattattgt

Function

GO: NA

KEGG:

id description
K18260 CC2D1; coiled-coil and C2 domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10026 lncRNA downstream 28075 26809948 ~ 26865737 (-) False G6856
TU10030 lncRNA downstream 28075 26863103 ~ 26865737 (-) True G6856
TU10053 lncRNA downstream 129332 26760004 ~ 26764480 (-) True G6870
TU10058 lncRNA downstream 135520 26754732 ~ 26758292 (-) True G6874
TU10071 lncRNA upstream 10667 26917679 ~ 26919998 (-) False si:ch211-286b5.5
TU10072 lncRNA upstream 10667 26917679 ~ 26920034 (-) False si:ch211-286b5.5
TU10082 lncRNA upstream 26120 26933132 ~ 26942207 (-) True G6887
TU10127 lncRNA upstream 77532 26984544 ~ 26985660 (-) False LOC122349164
TU10130 lncRNA upstream 87426 26994438 ~ 26994699 (-) True G6923
XM_043223872.1 mRNA downstream 2530 26879067 ~ 26891282 (-) True mri1
XM_043223543.1 mRNA downstream 15662 26872656 ~ 26878150 (-) False zgc:158803
XM_043223471.1 mRNA downstream 15663 26872656 ~ 26878149 (-) True zgc:158803
XM_043224150.1 mRNA downstream 21828 26870294 ~ 26871984 (-) True pane1
XM_043224041.1 mRNA downstream 32042 26857457 ~ 26861770 (-) True rab1aa
XM_043224264.1 mRNA upstream 4046 26911058 ~ 26911816 (-) True nanos3
XM_043223173.1 mRNA upstream 5591 26912603 ~ 26917615 (-) True si:ch211-286b5.4
XM_043223267.1 mRNA upstream 5591 26912603 ~ 26917613 (-) False si:ch211-286b5.4
XM_043223346.1 mRNA upstream 5591 26912603 ~ 26917612 (-) False si:ch211-286b5.4
XM_043224501.1 mRNA upstream 10657 26917669 ~ 26920029 (-) True si:ch211-286b5.5
TU10045 other downstream 90887 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 90887 26802170 ~ 26802925 (-) False c1h19orf53
TU9833 other downstream 475933 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 475933 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 758326 26130788 ~ 26135486 (-) False G6592
TU10183 other upstream 290893 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 334212 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 847770 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 847770 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 1167636 28074648 ~ 28076444 (-) False LOC122349330

Expression Profile