RNA id: XM_043226871.1


Basic Information

Item Value
RNA id XM_043226871.1
length 2869
RNA type mRNA
GC content 0.46
exon number 24
gene id cfap221
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7187566 ~ 7196661 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGATTATTTGTTATGAAGTTCAGCTGGCATGGAGGTGGTTCATTCTGCCCCCGAGACCTTCTCCAGGAGCGTAAAGAAGAAAAACCTGCTTCCCCTCAGCCAGCTTCTGGAGGACACCAAAAAGAGTGGAAATATTCCCCATCATCTTCTGGAAACTAGGGTGTTTGCCAAACTGAAGAGCAACGGTGTAGTCCATGCCGAACCATTAGAAGTGCATTTCAGTGGCTTTGAAGTAGGAAAGGATTACAGGAAGAATCTGAAACTTGTCAATGTCTCTTCTGAGGTGCTCAGTGTCCACATTATACCCCCTTTGACAAAGCATTTCCAAATTAAGTACATCAAAAAGtgcAGACTGGTTCCGGGTCTGGCTTACACTGTTACAGTGCATTTCCAGCCAGATGAGTGGCGTTACTTTTCTGATAACATCAGGATTCACTGCAAGgaTGAGGAGAACTTACTTGTTCCTGTTCATGCATATCCTGTTATCAATGATCTTCACATCCCATCTCACATTAGTCTTCCCCCAGTGCCACTTGGGCAGAGTGCCAGTCATGTGATTCCACTTAGCTGCAGTTGCCCAATAGACTTCGAGTTTCAAGTGTACTGCCTTCAGCCCCATAAGGCCTTCACTGTAAAACCACTCTCAGGGATTATTCCAGCAAATGGAAAGACTGcgttaaaagtgacatttacacCTCTGCGATACGGTACAGCTGATATCACATTGCAGCTGGTCATTTCTCAGTTCAACTCTAAACCTGTCATCTTCACCGTGACTGGTTCTTCATCTCCATACCTTCTGCTCAGTAAACCTGATGGAAGTTTCGAGGATGACGATCATTTTGGTGAAGAGCGGAAGACGTCTGATGGAAAATCTCCAGCTGTTACATCCCATCATAAGCTTAAAACGGCTCCATCCTTGGAGAAGGGCAGCAAGAAGAAGACCAAACCCGATCCTCAACTGCAGGTTTCCACCACAGATATCACCACTCATGCAGGACTGGTTAAAATGCTTCTCCAGCCTCAAGACAAAATGAGATACAAGGACCTCCGGGAGGcCATGTCTTATACCAAGGTTGCAGACCAGACAAGAGAGATGAAAGaagctgcatttttaaagaagGTCCGACAAAAAGAGCAGAAAGCCAAACATATCTGCTGGCAAGTTGATCTGGGTGATGACCCATGTTCAACAGAACAGAAACTAAAAATTTTGAAGGAGCAAGACGAGGCTCTTGCTGCATACAAACTAAAATACAGCGGTGAGTCAGTGGCCTCTTCAAGATCTTCAACTAAACTTTCCTCACGGCGAGTTTTGCAACATGTTGGACAGctcccagaatgcactgctgTTTTCAGCAGCTATGGCACTGGCCGGCTGGAGGTCAGACAGAGAGCGCTCAGAATCTTCCAGCAGGCTTCTCGAAAGGTTGTTCTTCAATGTCGTATGAACAAGAGACTGGTGTCACTAAGAGAGCTTGTTCGCAAAACCAGGACTCTGCAGGGAGACAAAGAATCGGatGGGGATGAGAAGCCATGTCTTTTTACGATGACACCAGAAAAACTTCTGCCCTTCACCTTCAACACATTTACACCTGATGACGAACCTGATGAACTTGCTGTGAATGCATTGGGGCATGTTCCTGTCAGAATGCCTGAAGCGGATATGAAACTCACGATTCCATTATTCAGTCTAAAGGTCCCCCAGCGTTACAAACTGATGGGTTATCAGCCGCTGTCTGTCTATGATGCAGCAGCAACATTCATTCCTGCTGACCTGAGTAGGACATTACGCACCGGAGCACAGGATGAGTTGTTGCCTGTGGTGACTTGTACAGCTGTAGATCTCAGTGAAGATGAGGAAGATAAGGAACAAGAGGAAGATGATGAATCGGATCAGGATTTAGGTCCCATACTTAGTTTCAGTGCACCTGAAGGACTCCTCAGACCACCCAACTCCCACCCTCTCCGGatctttaatccTGCACCGCATGTTTATGCCTTCAAAACAGCTCCACTTTACTTGGAGTGTGACCTGAGCTTTCATTTGTGTCCACTGCCACGATACACCGTCCCTAAAGGCGATGTTGTGGGTGTGCATCTCCCTCCGACACAGAAGAAATTTCTAGATAGAAAGGATATAATCAAAGGGATTATGACATGGAAGAAGTTTCCCTCTGTGGCCTTGAGCACTTTATCCAATATTTCGACTATAAGAAACGACTGTGCCCCACACATGTCTGACCCCTTCGGTATCGTCCTGCTTCCTGTGGAGGCTCCTCCAGCTTTTCAGAATCTGCCCGACAACATCAGAGATGAGATTCAAGCTGGAGCGTCCGAGAGCTCAGATCTTCGTCTTACTCCTGAGATGGTTGAGGCAGAGTTCGGCCTTTCTGAGAGATCTTCAGCTACATCTATTAAAGAGGATGGACTTGAAGACAATAGTCTCAGAGCTCCAGTAGCAAGAGTTGCCTCTGCAGAAACAGCCATGAGAGACTCCCATGAGCAGCCATTGGCGTCAACACAGAGCAACAGACTGGGACCAAAAGTGCTGGGTAGATTAAAAGAATTGAAATCTACAGGCAGAGTCAGCTGTGCTTCATCAAGTGACAGTAAATAGCACTTTTATCTATGCTTTAGTAATTCTTTCATTAGTGCTGTAAATACATATTCTGTTAATAAGCACAACTAGAACAATGCAATGGACAGTGAAATGCAGTGCCAGCTCAGGTACAGTAAACCTGCGGACTTTAGCAAAATGCAGTGACAAGCCACCAGATGGCATTAAATGTCTGACACATGAAACTCAGCAACTGTACCTTCAGAAACAGATTTCATGATCAATATTTGTATGggatctttctcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2397 lncRNA downstream 17544 7167577 ~ 7170022 (-) True G1642
TU2400 lncRNA downstream 18145 7125642 ~ 7169421 (-) False G1642
TU2399 lncRNA downstream 18145 7147982 ~ 7169421 (-) False G1642
TU2396 lncRNA downstream 22845 7162261 ~ 7164721 (-) False G1642
TU2398 lncRNA downstream 22845 7162323 ~ 7164721 (-) False G1642
XR_006250485.1 lncRNA upstream 100833 7297494 ~ 7298145 (-) True LOC122341717
TU2425 lncRNA upstream 115591 7312252 ~ 7312898 (-) True G1660
TU2428 lncRNA upstream 119249 7315910 ~ 7316318 (-) True G1663
TU2585 lncRNA upstream 459417 7656078 ~ 7660532 (-) True G1781
TU2621 lncRNA upstream 546834 7743495 ~ 7797446 (-) True G1809
XM_043238247.1 mRNA downstream 43713 7141333 ~ 7143853 (-) True LOC122344694
XM_043238256.1 mRNA downstream 49086 7135760 ~ 7138480 (-) True LOC122344706
XM_043238266.1 mRNA downstream 51958 7134391 ~ 7135608 (-) True zgc:174945
XM_043238213.1 mRNA downstream 60159 7071589 ~ 7127407 (-) False trpc5a
XM_043222404.1 mRNA upstream 872 7197533 ~ 7203087 (-) True crfb15
XM_043236006.1 mRNA upstream 7343 7204004 ~ 7295829 (-) False dmd
XM_043236011.1 mRNA upstream 7343 7204004 ~ 7295638 (-) False dmd
XM_043236041.1 mRNA upstream 7343 7204004 ~ 7295634 (-) False dmd
XM_043236031.1 mRNA upstream 7343 7204004 ~ 7295633 (-) False dmd
TU2401 other downstream 18145 7162323 ~ 7169421 (-) False G1642
XR_006250919.1 other downstream 60159 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 646183 6539528 ~ 6541383 (-) False LOC122342514
XR_006251174.1 other downstream 719312 6458051 ~ 6468254 (-) False gaa2
XR_006251170.1 other downstream 912815 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006250549.1 other upstream 8923 7205584 ~ 7295633 (-) False dmd
XR_006250550.1 other upstream 22325 7218986 ~ 7295679 (-) False dmd
TU2800 other upstream 1406639 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 1582557 8779218 ~ 8782587 (-) False LOC122351550
TU2978 other upstream 1598410 8795071 ~ 8798355 (-) False LOC122351550

Expression Profile