Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043227086.1 |
| length | 1591 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 12 |
| gene id | rbpja |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056699.1 |
| NCBI id | CM032068.1 |
| chromosome length | 31761587 |
| location | 8691140 ~ 8694549 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0007219 | Notch signaling pathway | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0001757 | somite specification | biological_process |
| GO:0003140 | determination of left/right asymmetry in lateral mesoderm | biological_process |
| GO:0002040 | sprouting angiogenesis | biological_process |
| GO:0072149 | glomerular visceral epithelial cell fate commitment | biological_process |
| GO:0007367 | segment polarity determination | biological_process |
| GO:0039021 | pronephric glomerulus development | biological_process |
| GO:0039022 | pronephric duct development | biological_process |
| GO:0030325 | adrenal gland development | biological_process |
| GO:0022008 | neurogenesis | biological_process |
| GO:0060840 | artery development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU2833 | lncRNA | upstream | 56741 | 8631472 ~ 8634399 (+) | False | ppp2r2ca |
| TU2752 | lncRNA | upstream | 112779 | 8525581 ~ 8578361 (+) | True | G1902 |
| TU2721 | lncRNA | upstream | 216619 | 8395325 ~ 8474521 (+) | True | G1885 |
| TU2668 | lncRNA | upstream | 705525 | 7954711 ~ 7985615 (+) | False | pcdh10a |
| TU2551 | lncRNA | upstream | 877489 | 7812153 ~ 7813651 (+) | True | G1754 |
| TU2866 | lncRNA | downstream | 1408 | 8695957 ~ 8697410 (+) | True | G1968 |
| TU2873 | lncRNA | downstream | 17625 | 8712174 ~ 8714035 (+) | True | G1971 |
| TU2880 | lncRNA | downstream | 35508 | 8730057 ~ 8730394 (+) | True | G1977 |
| TU2882 | lncRNA | downstream | 46283 | 8740832 ~ 8742521 (+) | True | G1979 |
| XR_006251869.1 | lncRNA | downstream | 336274 | 9030823 ~ 9031823 (+) | True | LOC122352408 |
| XM_043230871.1 | mRNA | upstream | 4595 | 8680589 ~ 8686545 (+) | True | slc34a2a |
| XM_043248227.1 | mRNA | upstream | 17487 | 8669396 ~ 8673653 (+) | True | chic2 |
| XM_043246943.1 | mRNA | upstream | 22521 | 8660757 ~ 8668619 (+) | False | fip1l1b |
| XM_043228024.1 | mRNA | downstream | 5910 | 8700459 ~ 8705873 (+) | True | stim2a |
| XM_043236629.1 | mRNA | downstream | 67590 | 8762139 ~ 8780164 (+) | True | LOC122342651 |
| XM_043246377.1 | mRNA | downstream | 105768 | 8800317 ~ 8802624 (+) | True | LOC122350130 |
| XM_043250318.1 | mRNA | downstream | 348948 | 9043497 ~ 9044968 (+) | True | LOC122352717 |
| XM_043250406.1 | mRNA | downstream | 348948 | 9043497 ~ 9044968 (+) | False | LOC122352717 |
| TU2774 | other | upstream | 83426 | 8606828 ~ 8607714 (+) | False | cxcl8a |
| unassigned_transcript_3 | other | upstream | 227796 | 8463272 ~ 8463344 (+) | True | trnaa-agc_1 |
| unassigned_transcript_2 | other | upstream | 228689 | 8462379 ~ 8462451 (+) | True | trnaa-agc |
| TU2530 | other | upstream | 969715 | 7720319 ~ 7721425 (+) | False | spink4 |
| TU2312 | other | upstream | 1538920 | 7147137 ~ 7152220 (+) | True | mpc2a |
| TU2848 | other | downstream | 5891 | 8700440 ~ 8701372 (+) | False | stim2a |
| TU2886 | other | downstream | 76559 | 8771108 ~ 8778892 (+) | False | LOC122342651 |
| TU3004 | other | downstream | 340537 | 9035086 ~ 9035600 (+) | True | G2063 |
| TU3085 | other | downstream | 713856 | 9408405 ~ 9412437 (+) | True | G2125 |
| XR_006252046.1 | other | downstream | 1100650 | 9795199 ~ 9795414 (+) | True | LOC122353673 |
