RNA id: XM_043229390.1


Basic Information

Item Value
RNA id XM_043229390.1
length 4370
RNA type mRNA
GC content 0.48
exon number 25
gene id fam13a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24743634 ~ 24784452 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGGGGTCTTCAAGATGCAGACGGTCAGAAAGGTGGAGGTGGTTGACTGCTCCTTTCTCTTCTGCTTTTCGAAGCACAACAAGGCAGCTGTTCAGATCAAGGAGGACATGAAGAGGATGGTGCAGCTGCCCATGATCAAACCCTCACCGGACAGCGTCACAGGAGGGAAGAAGATCTTCGGCGTGTCCCTGCTGGAGTTGAGAGATCTGGGACTTGTCAAGGACGGGGTTCCTGTGGTGGTCCGGAGTATGGTGCAATATCTGGAAAAGCATGGTCTTCTTCTGGAGGGTCTGTTCAGAGTCAACGGCAGCGTCCGGGCCGTGGATCACCTGCGGCGGAGGTTTGATGGAGGAGAAGAGGTGGATCTTCATCAGGACGCAGACGTCTGTGCTGTAGCCAGTTTGCTGAAGCAGTTCTTGAGGGATCTGCCTGAAGGTCTCATCCACCCCTCCGTCCACAGTCCTCTCGTTCAGCTGTACCAGGAATCCGGTGAGGGTGACTTCTGCAAGGACCTGCGCGAGCTCCTACTCCAGCTGCCAGATATACACTACAGTCTCTTGCAATACttatgtcacttcctgtctcagGTGGAACGGGAACACGCTCATAACCGCATGACCGCCACCAACCTGGCCACCGTGTTTGGGCCCAACGTCTTCCATGTGTCATCTGGTTTTGATGGTATACGGGAGCAGAATATCTGTAACAACATTATGGCCAAGCTGATCCAGAACTACAGCGCCATCTTTGAGTCTGTGGAAGAGAGAAAACAGATCGAAGAAAAACCATCAAACCTCATCGTAGTCAAAGAGGCcaacacaaacactgaaaacacagaGACTTCAACTTTCACTCCTGTTCCGAGGGCGCACGCTCCACATGTCAAGAAGATGAAGGTCACTCAATGCACTCTAGTGGACAATAAAGACCCGTCTAGAGAAAGCGAGTCTAGTCCAGAAAATCCCATTCCCGTGCAGAGAAAAAAGAAGGTGAAGAAGATAAAGACCGAGGCCGTGCCGCGATCTTTTCCTCAGCCGGCTCCATCCGGCGATCCCGTCTCCAGGCCTTTTCCCCATCTTCCAGACAGAAGCTCTGGCGCTAGAGCTCAGTTTTCTCCACACTCTTCAGATCAGAGCATCAGCTCCAGCGCAGACGACATGAACCTGAGCTCTCGGACCGCAAGCCCTGCCAGATCCTCAGAGACCTTCAACAGTTTCCAAGAAGATGAAAGACCGATATCTCCTTTCTATATTAGCTCCCAGATCTCTCCCGGACACTGCAGACCTGAATTAACAAAtTTTCTGGAGAAGACCATTCGCTCAGCGGTCGAGCAACACCTCTTCAGCTCGCACATGCCCACAGGTCAGAGTTCAGAGGGCTTGGGTCCCACTGGCCACTCTTCATCTCCTGTGACGACAGCCCGAGAGAGGAGGAGGCATCTACGAGAACAAGAGGAGAGCTTCAGGGTCGAGGGTGATAAAGAGAACGTCCCGTCTCCGGGTGCGAGGGTCACAGAGGAGGGTGACAGGCGTCTGCTGCTGCCATCCCCAAACGAGTATCAGAGAAACGGGAAACCTAAACACAATCCCGCACTGACCGAGCACTCGGGCAACCAGGACCCCACCCCAATGGAATGCCAAGGACCTGATAGGATTTGTACGGAACATACGACATCAGCTGATTACAGGAGGAACCATCAAAAGAACAATGGCTTGCATTCTATTCAGACGCCTGCCATGAAGATCCAGGAGGCTCTTAGTGGCGCAGAGCCGTGTGACGATGTCCCTCGACTGGATCTGTCTACTCTGACGGACAACAGTAACTGGGcagATTCTCACTTCTTTAGTGCCCCTTTCCTTGActttaaaagccttttaaagTCAAGTCACAATGAGGAACCAGTCCCGGCTTACTCGTCGTGGCAAAGGGAGAGTATGGACCGCGAAGAAGCTCGTCTGTCACCCCACGCCGGTGGCAAGCTAATTCGCCAGCTCCTGGAGGAAGACAGCGACCCAATGGTCTCGCCACGATTCTACGCTTATGGAGACGGCCAGCAGTATCTGGATGACACTGAAGTTCCTCCATCTCCACCCAATGCCCACTCCTTTGTCAGTAGGAGAAGAAGTTCATCATTAGGCTCCTGCGACGACGACCGGGAAGAGCTCACTTCAGCCCAGCTTTCAAAGCGTATCCACGTACTCAAGAAGAAGATCAGGAGGTTTGAGGAGAAGTTTGAAGAGGAGCGTAAATACAGGCCTTCACACAGCGACAAAGCCGCCAATACAGAAGTTCTGCGGTGGATGAACGAACTGGCCAAGATGCGCAAAGATTTAAAAGATCACAAGTTGCTAAAGTCAGAAGAGGATTTGACGCCCATCCCCCGCCAGCGCAGCAACACTCTTCCCAAGAGCTTTGGATCTCAGCTGGAGAAGAAACCCACTGAGACCAAAGCCCCCAAACCTCCTGTGGAGAGCACGCTAGAGACAGTTATGAACAAGCTGCAGGAGAAACGCAAGGAGGCTGGCCGACCCGAAGACATTAAGGACATGACCCGTGAGCAGATAGGAGCAGAAAAAGTGGCCCTTCAGAAAGCTCTGTTATATTACGAGAACATCCATGGGAGACCAATCACCAAGAACGAGAGGCAGGTCATGAAGCCTCTGTACGATCGGTACCGACTCATCAAACAGATCCTCTGCAGAGCGTCTGCCATTCCAGTCATTGGCTCGCCTTCCAGCAAGCGCAGAGGCCCCCTGCTGCAGCCCATTATCGAGGGTGTACCAGCCCTATTCTTCAGCGACACCAAGgaggaggaggacggcTCAGACGACGACAGCGACACCAGGACACAGTTCACGGTCACGGTTAAGCCGGAACTGAGCATGCTGGGACTTCTCGACCAGCTGGATGAGGACACAGATGGTTTCATCTCACCTGTTGATGAACTCTCGCCCTCCAAGAACACCACTGACATGAGATTGTCCAATTTGCATGCTGCTACCATGCAGGAACTTGTGGAGCAACTCCAGGAAGCCcgtgaagaaaagaaaagaatccGCAAAAACCTCCGTGATTTTGAGGATCAGTTCTTCAAACAGAACGGCAGAAACGTGCAAAAAGAAGATCGCTCACCCTTGGCTGGAGAATACAATGAATACAAGCACATTAAAGCCAAGCTACGGCTGTTGGAAGTGCTCATCAGTAAAAGAGACTCCTCTAAGTTCATCTAGAACTCAGCTGGAATTTACTCTACTAGACGAACAAGGACCAGCCACTGCTATCCAAAGCAATATAGGGTGTACAAAGACTTGTTCCTCTATTATTGACTCATTACAGGCACATTTGGCTTTTTGAAGGACGCCAAGACATGCCTGGCTCTCCAGATGTACAGTGCCGTTTGTTCCACTGTACAGCATAAAGGACTTGTGTTCTGCTTTGgacttacaatttttttttttttttttttgcatatgctGCGAGACCGTGGATTTTCAGATTACTTGTGAACCTCTGATCTTAATTCCCTTTGTGTTGTATTACGCGACAATTCGTAtggatttttagctttttttctatattaatattgCTGTAATATAGAAACAACTGTGTTTTTCGCAATCAGACATAAGCTTTGAAGAACACTGAGATAACGCGGCTTAAATCATACTTAGAGATGAGGTGAGTTTATCATTATAGGAACTTTTCGTCTTTGATGATTTGAAGAAGGTAACCGATTTGTGGAAGGAAGGCTCTCTGTATATTATTTTTCGCTATTTACCGGTGCCataattctttattttgaacattaatgcttctgagaaaatgtattgtttgttcgCCGTTAATGAAATTTCTTTCTTCCCCCACTAAGACCATTGACTAAGCTAGAGTTTactttacaaaagaaaaaaaaaaagtgcaaatgaacaactgtaagaaaaaaagaaatctgttgCCATTTTCTAATGGTGTAGAAACGCACAAAGGTACTATAATTTagctttgttatttttgtagtgtttttttgtacTCCAGTGTCTAACTGGCCATCAAATGAAGCTCACTGTTTAGCAGTGATGTGGGTGGATTGATTCCCCTCAAAACCGTCTCTATTGTTAGCGAGCAATAGAAAGCAAAACTGTGGGGCCTCGCTGAGCGTTTACGCCTCGTAAATGCAGACAAAAACTGAGCGAGCGCGTAACCCCCTTCTCTTATTCTCCAGATTGGAAAATTGTAGTGTGACCTTTGTTTTTACAGAACGTGACAAGGCTGATGGATAAAGATGAATACTGTGTGTACATTTTAGTACATGagattgtatttgtattttgtatatatgacataaaaaaaccaaactattttttctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8762 lncRNA downstream 53938 24689178 ~ 24689696 (-) True G6019
TU8402 lncRNA downstream 182181 24560839 ~ 24561453 (-) True G5780
TU8387 lncRNA downstream 191754 24551583 ~ 24551880 (-) True G5769
TU8380 lncRNA downstream 235167 24503083 ~ 24508467 (-) True LOC122362739
TU8379 lncRNA downstream 237807 24503083 ~ 24505827 (-) False LOC122362739
TU8806 lncRNA upstream 32418 24813313 ~ 24813523 (-) True G6049
TU8809 lncRNA upstream 60019 24840914 ~ 24863374 (-) False LOC122345669
XR_006251020.1 lncRNA upstream 60866 24841761 ~ 24863087 (-) False LOC122345669
TU8811 lncRNA upstream 63806 24844701 ~ 24863374 (-) True LOC122345669
TU8810 lncRNA upstream 79735 24860630 ~ 24863374 (-) False LOC122345669
XM_043237513.1 mRNA downstream 36457 24690982 ~ 24707177 (-) False col17a1a
XM_043237511.1 mRNA downstream 37822 24690982 ~ 24705812 (-) True col17a1a
XM_043237562.1 mRNA downstream 69089 24665838 ~ 24674545 (-) False tsga10
XM_043237553.1 mRNA downstream 69089 24665838 ~ 24674545 (-) True tsga10
XM_043242208.1 mRNA downstream 84531 24652160 ~ 24659103 (-) False cracdlb
XM_043229413.1 mRNA upstream 4384 24785279 ~ 24802425 (-) True zgc:154142
XM_043245367.1 mRNA upstream 25889 24806784 ~ 24812170 (-) True gprin3b
XM_043239933.1 mRNA upstream 102505 24883400 ~ 24891467 (-) True spast
XM_043239967.1 mRNA upstream 114946 24895841 ~ 24902227 (-) False psen2
XM_043239977.1 mRNA upstream 114946 24895841 ~ 24902067 (-) True psen2
TU8153 other downstream 571572 24167112 ~ 24172062 (-) False G5624
TU8816 other upstream 87546 24868441 ~ 24870465 (-) True G6056
TU8851 other upstream 191596 24972491 ~ 24973371 (-) True G6073
TU8856 other upstream 207881 24988776 ~ 24993345 (-) True G6074
TU8865 other upstream 213588 24994483 ~ 24995820 (-) True G6078
TU8873 other upstream 245768 25026663 ~ 25028129 (-) False LOC122349000

Expression Profile