RNA id: XM_043231680.1


Basic Information

Item Value
RNA id XM_043231680.1
length 3280
RNA type mRNA
GC content 0.43
exon number 22
gene id arhgap10
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18101980 ~ 18147523 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gctTACACCCGTTGGAGTTCAGTGAGTCTTACCTGGACAGTCCTGCTTTCAGGGACAAAATCAAAGCTCACGAAGCAGAGCTGGACAAAACCGGCAGGTTTATCAAAGAGCTGTATAAAGATGGAAAGAATCTCATCAACGCTACAAAACAGCTTTCATTGGCCCAGAAGAAGTTTGCTCAGTGCTTGGGAGAGTTCAAATTTGAGTACATCGGAGATGCCAAAACTGACGATGAGAAATGCATTGATGAGAAACATCACAGAGACACTGATGAAGCCTTTAGAAAAGTTTCGGAAAGAGCATCTCGGCTCagcaaaggcagagagaaagaggtaCGAGAAGGAAACAGAGAAGTACTACAGCTCACTAGAGAAACTTTTGAACATGTCAGCAAAGAAGAAAGAGCCACAGTTACAGGAGGCAGACATGTCGGTGGAAGTGATGAGGCAGCACTTTCAGGAGTCGTCTCTGGAGTATGTTTGCAAGCTGCAGGAGATACAGGAGAGGAAGAAATTTGAGTGTGTCGAACCTATGCTGGCATTCTTTCAGACTGTATTTACTTTCTATCATCAGGGATACGAGTTAGCCAAAGACTTTTACCATTATAAGAAAGCCCTTCAAATCaatattcaaaatACAAGGAATCGTTTTGAGGGCACACGCTCTGAGGTGTACGAATTAATGAAGAAAATCAAAGAATCGCCACAGGAATACAGACAGACCAGCCCCATCAGCAGTGAGGGCTATCTTTACGTACAGGAGAAACGACCACCTCCTTTCGGTTCCAGCTGGGTGAAACGCTATTGCACGTTTGTCAAAGAACAGAAAATTCTACACATGAAGACATTTGACCAGAGATCAGGCGGGAAGCTTGGTGAGACAGAGTCTGTTACAATCAAGTCTTGTGTCCGCAAAACCACAGACACTCTTGACAGGAGGTTCTGCCTAGACATAGAGATCACCGATCGACCGATCACACTGTTGACGGTCCAGGCACTATCAGAAGACGACCACAGATTCTGGATGCATGCAATGGGAGGAAAGGAGCCGatgcaATATCTCAACCGGACATATTCACGAGAAAGAGGAATTGATGCCCAGTTGGATGACGTGGGAATAAGCCTTgtgaaaaattcaataaatgccATTGAAACCAGAGgaATTAATGATCAAGGTCTATACAGAGTTGTTGGGGTCAGTTCAAAAGTACAGAAGCTTCTCTGTTTAATGATCGATGAGAAGAGCAGTGAAGTAGATTTAGCAGCCAGTGAGGACTGGGATGTCAAAACCATCACCAGTGCTTTAAAACTTTACCTGAGGAGCCTTCCAGAGCCACTAATGACATACGAGCTGTATAAGGAGTTCATCGTCCCTGCAAAAAGCGCTACTCCAGAATCTAGAGTTCAGGCCATTCACTGCCTGGTTCATAAACTGCCAGAGAGGAACAGATTAGTGCTCAGTCTGGTTACCAAGCATCTTGCCAATGTTGCTGCCAACAGCAAACAGAACCTTATGACAGTGGCGAACCTGGGTGTAGTATTTGGCCCCACGCTCATGAGACCACAGGAAGAAACGGTGGCTGCCATTATGGACCTCAAGTTCCAGAACATTGTGGTGGAGATTCTCATAGAACAGCATGAAAAGatATTCGGGGATGCTCCGAGCAGCTCTCCAACCTTAGCTGCTACACCCCTCTCTGCACCAACCAGACAGTCCAAGAGGCTCAGCCGGCAGAATCGCCCGCTGGCTGTATACAACCAGCAGGTGCTGGATATCCAAACAGTCTCTCCATCCTCTGAGAGTTCAGCCCTGGTTAATGATGAGACATCAGTGGGCAGTAATGAGTCGGTCTCCTCCCAGTCTTCAAATGCCTCTGGAACGCCCCCCGAGAAATCTAAGAATCACCACGCTACCATTAGCACATCCCTGCCAGAGAGCACTGGgaTATGTACCGCCACAGCTTCATGGATGAATTCCGCCTCCCCTGCCTCAGTTGCACCGGCGAAACCTGGATCTGTAGGAACCGAGAGGAGTAAACCCGAGGAAAGTGTCACCCTCATGAAAGCAAAGGCTGTGTACCCCTGTGAGGCTGAACACGATTCCGAACTCTCTTTCCAGGTTGGCGCAATCTTCCATGACGTGACACTCTCCAGGGAGCCCGGATGGCTGGAGGGTGTGCTGGAGGGAAAGCGAGGACTCATCCCTGAAAACTATGTGGAGATACTGTAACTACGAAAAGTACTATCCTCACACTTGTCTTTATATACATGGTATCCATGGTCACGGCGGCTCTTTCACAGTGGCACTGCTTGTTGTTCCTCCATCCTTTTCCACACTAAAGACATTgagagagaatatatatatataaactgtaccCAAAAACACAGATGTTGCAAACACAGGAGATGAGTTCAAGTATAAGCTCAGATATGCTGTATACGTACAAAGAGTCTGCacttttagaaatgtaaatataaatttacGCGGGAAAATATGCATCCGTCATTGTGACTGtgttgtcctttttttttttttttttttttttaaatgcatgtctcATTATTTTAGTCTAGTGGTTTGGTGGTTTATCATTAATGTACTCAACACTCAGAGATACCTTgagtatatttgtatttaatgttatGAAGTTGCATTTAATTGGGCATGTGATGATGTGTAGTAAAATGTGTAAGTGCAGTGAACATCGTCAGTTTTGTTCATTGGAACGCTAGAGCGCTTATTAGATAAAAAATGTAGTGCTTGTCGGTTATTGATGTTGAAATTGATATGCGATTATTAAACCGTTCGCATTGATTAAAACTAATGCTGTGCCTTAAATTTGTTACGCATAGCATGTGGGACGCTGATCAGTAACGCCGATCAGTGCAACTTTTTTGCTATTCTGTATATAGGTTTTATTTCGAAGAACAGAGACGgatatattaaaaatctataaaacctacaattacataaaaaaaaaattgccaagtTTTCCAATCCGTGTTGTATACATAGAAATATTTTCGTGCAAGCTCTTTCcctctttaaagttttaaagattAGCATATAGTTTTTACAGAAACCTTAAAAATGGCAGAACTTCACTGATATTTAATGagaccattttcatttttctaagAGCCCTTGTTCCGCGGGTTCATGTTTGTGATTGAGCGTATCTGCGGTGATTTCAGACAGTGATTTACGATCTCTGCAAAGGTCTTGGTATCATTGTTTTCGATGTTGatcaatgttaaataaataaagcgttTTATTCTTA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5832 lncRNA upstream 203440 17896588 ~ 17898544 (+) False lsm6
TU5873 lncRNA upstream 354885 17745851 ~ 17747099 (+) True G4105
TU5867 lncRNA upstream 454522 17644218 ~ 17647462 (+) True G4099
TU5856 lncRNA upstream 494781 17583917 ~ 17607203 (+) False gab1
TU5849 lncRNA upstream 564947 17536825 ~ 17537037 (+) True G4088
TU5942 lncRNA downstream 65782 18213305 ~ 18215084 (+) True G4166
TU6140 lncRNA downstream 162411 18309934 ~ 18311341 (+) True G4296
TU6182 lncRNA downstream 450833 18598356 ~ 18599659 (+) True G4331
XR_006250297.1 lncRNA downstream 546646 18694169 ~ 18717089 (+) True LOC122340556
TU6214 lncRNA downstream 546660 18694183 ~ 18694573 (+) False LOC122340556
XM_043231862.1 mRNA upstream 7489 18086895 ~ 18094495 (+) True tmem184c
XM_043236361.1 mRNA upstream 19428 18071025 ~ 18082556 (+) True ednraa
XM_043243643.1 mRNA upstream 110660 17987539 ~ 17991324 (+) True pou4f2
XM_043228154.1 mRNA upstream 203438 17896535 ~ 17898546 (+) True lsm6
XM_043240942.1 mRNA upstream 298353 17796353 ~ 17803631 (+) True zgc:152968
XM_043243227.1 mRNA downstream 99728 18247251 ~ 18284644 (+) False dclk2a
XM_043243300.1 mRNA downstream 99728 18247251 ~ 18282799 (+) False dclk2a
XM_043243308.1 mRNA downstream 99729 18247252 ~ 18282799 (+) False dclk2a
XM_043243220.1 mRNA downstream 99730 18247253 ~ 18284644 (+) True dclk2a
XM_043243267.1 mRNA downstream 99730 18247253 ~ 18284644 (+) False dclk2a
XR_006251846.1 other upstream 493143 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 2448603 15653093 ~ 15653381 (+) True G3647
TU5171 other upstream 2603304 15478098 ~ 15498680 (+) True G3599
TU4855 other upstream 3310196 14725072 ~ 14791788 (+) False G3380
XR_006251260.1 other downstream 99727 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other downstream 99729 18247252 ~ 18282761 (+) False dclk2a
unassigned_transcript_101 other downstream 431227 18578750 ~ 18578831 (+) True trnas-aga
TU6436 other downstream 1373561 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 1964919 20112442 ~ 20112514 (+) True trnak-cuu

Expression Profile