RNA id: XM_043233717.1


Basic Information

Item Value
RNA id XM_043233717.1
length 4076
RNA type mRNA
GC content 0.43
exon number 22
gene id si:dkey-26i13.8
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7548351 ~ 7559412 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaacatttaaaaaaagtacagaataaaataaaccaagagAGCACATGCTCTCATAAAAACTCATAAAAcgacaaaatatattaattggGCAGACTCGTTTTTGGCGCAAAAACCTGCCAGTGTATCCGAGTGTGTACTTCTCTCCATAGCAACAGTAACAGCTTCCTCGCGCCAGACTGGTTGACTGGTATAAAGAGGCACAACGCAACGGTTCAACCTTTTTTAACCTCGTTTACTCTTAAGTAAATATGAGGATTGCTATGGTTTGGACcgatgaaaatacagttttagctTCTCTTGAGAGCGTGGGTTGGCGCAGTCCCAGCATGGCAGGCGCGAGTCGGTTAGTTTGACACCTCCAGGGGTTTTTATCACCGTTAACAACAGTCCGCTGGTGACTTCAGGACCTCCACAGGGGCCAGCACACAGTCCTGCCTCAGAATGAGATTACCCAGCCACCAAGAAGATTAACTAGCCCACGTACAAGGTTGGAGTAATTTGGCAATAAAAGGATGAAGGATTTGCCAGGAGAGTGGAAAGACCATCAGCTCACGGTTGCTCTGCGCATCCGACCACTGAATGATGCAGAGATCGAGGAGGGTGCAACCACAGTGGCTCACAAGATTGACAGTCAGATGGTGGTGTTGATGGACCCCTGTGAAGACTCCGACAATGTCCTGAGGGCCAACCGTTCACGTGAAAAAACATACATGTTTGATGTGGCGTTCGATTATACTGCCACCCAGgagGATGTTTATGTGGCGacaacaaaaaatctaattgatGGAGTGATTGCTGGTTACAATGCCACAGTCTTTGCATATGGACCTACAGggGCTGGGAAGACGCACACTATGTTAGGGTTAGATTCTGAGCCGGGCATCTACATCCGAACACTTAATGATCTCTTCAGTGCCATTGAAGACAGCACTGAAGATTTGGATTGCAGTGTTTATATGTCATATATAGAGATTTATAATGAGATGATCAGAGATCTGTTAAATCCATCCTCTGGATACCTTGAGCTGCGTGAGGATGCTAAAGGCGAAATACGAATTGCAGGCATCACTGAATTTTCTACATGTAATGCCAAAGAGATAATGACTCTTTTGACCAAAGGGAATAAACAGAGGACCCAGGAGTCGACAGCTGCTAACAAAACATCATCTCGCTCTCATGCTATTCTTCAGGTGACAGTCAAGCAAAAGAGCCGTGTAAAGGATATCAACGAGGAGGTCAGGGTGGGAAAGCTATTCATGGTAGACTTGGCAGGAACTGAGCGAGCATCACAGACTCAAAACAGAGGAAAGAGAATGAAGGAAGGAGCACATATAAATCGTTCCCTGTTAGCTCTGGCCAACTGCATCAATGCCTTGAGTGAAAAGAGTGGGAAAGGAGCTCAGTTTGTCAACTACAGAGACAGCAAACTCACTCGACTTCTTAAGGATGCTTTAGGAGGAAACAGTCGCACAGTCATGATAACCCATATCAGTCCTGCCAGCTCCAACTTTGAAGAGTCAAGAAATACTCTGGTTTATGCCGACAAAGCCAAAAATATAAGAACCAAGGTGAAACGTAAtttgatgaatatttcataTCACCTGGCtcaatatacacatattattgcTGATCTGCGAAGTGAAATTGAGCGACTTCGTGCAAAGATTGACCAACAGAGTCAAGAGCAGCAGAAAGGAGAGAAAGCAGACATTCGTGAAATTCAAGCCGAGGTGCAGCAGTATAGTCATGGCGAGATGGCTTTACTGCAGGAGCAGCTCTTGTCTGCCTTCAGAGAGCAGATGGAGATCAGACGCAGCCTCATGGAGCTGGAGAACTGCAATATGGAGCTCCATATAGACACATCTAGACATCTGATCACCATCTCAGATTGGGAGCGTGATCGAGCACGTGCCCAGCGAGGGAGAGATGATGTAATTagagagaaaacagacagagacaagGAGGAAGAGCAAGAGAGTGGACCAGAGGAGCCTCAGTATGTCACAGCAGCTCGAGAGGAGATCGGCCCACTTCTGGCTGAACAGAGAAAGACAATGGAGCTCAAACGTGAATTGGAAGAAAAATTATTGAACATGAAACTGAAGTCATCTAAGATTGAGGAGTTGCTTCCTAAACGCATAAGTAACCGTGAGCAGAGAGACATTCTGACATTGCTTTGTAAGGTTCATGAGCTGGAACTTGAAAAAACTGAAATCCAGTCGGCTGTTCTCTGCAAAGAAAATGTTCTCCGAACAAAAGACTTCATCATTCAGCGCCACGAGCAGCAGCGGACGCTCTGTGATGACATTATACACCAGCAGAAGGCTCTGATCGAAGATCAAGGACTTTGTGTACCTGAGGAATTACAAGAGCTTTATTCACTCTACTTTAGTGAATTAAGTGATGGAAATATCGACCAAATACTCAGCCTTCATACTTTTACCACAAATCCCAGAGCTGATAACTCTCTCATGATTATGGCCGGTCAAGTGAGACTTGATGTGATCTCCGATTTAGAAGAGACAGATAAAACACAGCAGAATAAGAAGTTCAGTCCTTTGGATAAACACCCCCGTGATTCTTCTTCCTCTGGGTTGGATTATGACAGTGACAATAACAAAGTTTTCAAATCACCATCTAAACTTAAGCCACAGAGACGGCACCACTTATCTTCTAGCAGAACCATTTCAATGAAGGTGTGTGCTGTTAAGGATTCGACTCCTGTATGTCCTAGTGAAGCTGTGAGTCCAGACACTCTGAGGGAAATTGTAAGTGACACCAAGAGCATTTCAGTCATTGCAGCAAAACGTCGCTCACATCTAGTGAAGGAGACCAACTCCAGAGCGGCCGGTCCGGCTTTGGCCGCAGGGCTCAAGTCCTCAGTGAGCATGGACAGTCTGGTTTCAACTTTGGCAGACGAGTCGACTGAGGTCAAAAGAAACCCTCCAAGACATGGAGGCAGGTCCCAGTCAAAACAGGACTTAAAGACATCGGAGGGCAGAATGGAGAGACAGCAGCGCAAGAAACGGTCCAGATCTTTTGAAGCAAGCAAAAGGCAGGTACAAAAACCAAGACAGAACCTTTCCAGATATCCAGCTTTGGAGAGTATCTCAGACAACCGGCTTATGAGACCAGCTTTAAACGTGATCCAGCCACTCAACAGTAGTGCTGGAAACCCTTCAACACCACCTGTAGCTAAAGTCAAAAACCCCAGCACTCGCTTTACAGGAGAAGTGCAACTTGGGAAGTTAGAGATCAGGGGAATGCCACCCAGTACCATCCATCAAAAACAATCAGATATCAAACGAGGAGGACAGGCGACCTACAAACGACAGCGAGgcCCAGGAGATGTTTCTTACTCCAGCAATCTCCTACAGCAGCCAGGCAATTACAAGAAGTCCACAAACGAAAATCCTAGACAAAAAGGAATGGCTGATGTTAACAGAAAGAATGAagcacagcaaaaaaacaaatataccgTAAAAAAGTCACAtgtctgagtttttttttaattcttgtaCAAGggaatattatctttttttttgctctaaaaTGTACAGATGAGACTACGctgattttaatgttgtttgaGAATTATCGTGTGTTGAAAATCTTGtaattcaaaaatgttaaatataaattgtatacaGTTTGTCTGCTTTGAAACtgacaatacaaaaatattttgacaattcacattttaagcaaatttatttgaaaaaagcaaagcattGAAATGATCACgatgtaacactttttttaaggtgtgataatacagagtaattacctagcaagtacttagtagtagcaaatgtacatgaaacaaaatgtactggccatgtaactaagttatggaacagtttgcACTTACAGTTTGTCATTATGTAGATGTCGGCTGCAGACAAACCAAAAGATTGTTGCATAtgtgttgcagactttatacaatgtaattataaattgcACAGAAataagctatttaaaataaagtgtgtcaagattgtacttaagtgtatttcttgtgtatctatactgtaaACCTTCTACTGTAGTCTAGCTGCACCTTAGTTAGATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436 lncRNA upstream 140146 7401131 ~ 7408205 (+) True LOC122330513
XR_006248615.1 lncRNA upstream 140148 7401131 ~ 7408203 (+) False LOC122330513
XR_006250461.1 lncRNA upstream 226582 7318202 ~ 7321769 (+) True LOC122336506
TU2316 lncRNA upstream 404610 7135796 ~ 7143741 (+) True G1577
TU2489 lncRNA downstream 38855 7598267 ~ 7606500 (+) True G1706
TU2477 lncRNA downstream 65536 7624948 ~ 7628311 (+) True G1697
TU2478 lncRNA downstream 88477 7647889 ~ 7648624 (+) True G1698
TU2522 lncRNA downstream 147473 7706885 ~ 7708131 (+) True G1732
TU2548 lncRNA downstream 246293 7805705 ~ 7806252 (+) True G1751
XM_043246633.1 mRNA upstream 671 7540403 ~ 7547680 (+) True LOC122350276
XM_043246642.1 mRNA upstream 671 7541621 ~ 7547680 (+) False LOC122350276
XM_043247586.1 mRNA upstream 233914 7311397 ~ 7314437 (+) True knstrn
XM_043248034.1 mRNA downstream 1420 7560832 ~ 7562287 (+) True LOC122351150
XM_043250327.1 mRNA downstream 56583 7615995 ~ 7623816 (+) True snx8b
XM_043250335.1 mRNA downstream 56583 7615995 ~ 7623816 (+) False snx8b
XM_043245976.1 mRNA downstream 92310 7651722 ~ 7660532 (+) True tspan5b
XM_043245977.1 mRNA downstream 92310 7651722 ~ 7660532 (+) False tspan5b
TU2312 other upstream 396131 7147137 ~ 7152220 (+) True mpc2a
XR_006251795.1 other upstream 689783 6846500 ~ 6858568 (+) False LOC122351737
TU2119 other upstream 702803 6711635 ~ 6845548 (+) True G1447
TU2148 other upstream 766210 6779618 ~ 6782141 (+) False rgs11
TU2062 other upstream 1011394 6533502 ~ 6536957 (+) True G1414
TU2530 other downstream 160907 7720319 ~ 7721425 (+) False spink4
unassigned_transcript_2 other downstream 902967 8462379 ~ 8462451 (+) True trnaa-agc
unassigned_transcript_3 other downstream 903860 8463272 ~ 8463344 (+) True trnaa-agc_1
TU2774 other downstream 1047416 8606828 ~ 8607714 (+) False cxcl8a
TU2848 other downstream 1141028 8700440 ~ 8701372 (+) False stim2a

Expression Profile