RNA id: XM_043233753.1


Basic Information

Item Value
RNA id XM_043233753.1
length 2609
RNA type mRNA
GC content 0.45
exon number 3
gene id rnf11a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31745962 ~ 31750050 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTCCTTGTATTTCTTCGGTATTTGCGGAACGAAAAacgaaaaactacattacccacaaGCCACAGATCAACCCACTTCCGGTCCAAGAGTTTGTAAACAATGAAAGGAGATATGGAGTCGACGAGAGGTCTTACCTAAAAATATTGTCCTGTACAAGCCATAATACGCGCATATTATATGTCATGCACGCCGTGCACACCCGTAAGGGTTAAACCAACCGGGGCGTATCGGTTTTCGAGGATTGCCGCTCTTTTACGCGTGCTTTTTGCCTGAGCGAAAATCGGACAGCTGGCTAGCGACGCGTTTGTTTTTCTAGATACTAGACGGGCGTCAGACACAACGGGCTGCAGAAAGGACGGTCCCTGAACACAACCGAGGACTGGCGAGTCTTTCAAGGGCCACCTAGACGTGATTTTGTCGTGCGGTGCGGGATCAGCTCAATGGGGAACTGTCTGTCTTCTCAAGGCGCTGATGATCTGTCCCTGCTCAACGAGTCCGAGGGGGCGAGTCTGCCGGGAGAGCCTCCGCCACCCTACCAGGAGCGGGTGCAGGTGCCGGTGTACCATCCCACACCCAGTCAGACGCGGCTGGCCACTCAGCTGACGGAGGAGGAGCAGGTCCGTATCGCTCAGCGCATCGGCCTCATCCAACACCTGCCCCGTGGGATCTTCGATCCGGGCTCGGAGCCGTCCGACAAGAAGATCAAAGAGTGTGTGATCTGCATGATGGACTTTGAGTACGGCGACCCGATCCGGTTCCTGCCCTGCATGCACATCTATCATGTGGACTGCATTGACGCCTGGCTCATGCGCTCCTTCACTTGCCCTTCCTGTATGGAGCCCGTGGACGCTGCGCTGCTGTCTTCCTACGAGACGAACTGAGAGTGCCTGCGGAAAAACCCAGAGACCTGCCAATGAGTCTGCCAAGAGCCCTGAAACACTTGGGACAGTAGATTGAACAAATgaaggtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcagaGACTGTAAAAATGTCCAGTGCTGAACTTAAAAGGCCCTGGAAGGATGTTTAAAACCTCTCACTTGCATGTCAAAGCGTTTTTCGAATACATATACATGTGATTGATGTAAAAGTGAAGTTCGGCAAGGTGGAAAAAATTCTCTAATGAAGATAGAGCGTTTCAAAAGCCTGATTCGAATCGGTAAAATAGagttaataaattattgaaCTTTTTTCCTTTATTGTTCTAACCAAATTCATGAAATGTGCAATATATGCGAGAGGGACTCGTGTCCTTCTGATTGGACGTGGAACCCGCCCGTCGCCGAAATTCCACCAATGAGATCGCCCTTTCCGAATTCAACAAGTCTAGGGGGGCGGGGTTTCATTCCTGCAGGCTCTGAATGTGCCTTTTTGGGCTCACGGTTAGAATGCTGAGAAACCGAATTTACAAGAAAACACGTGCCATGATAACGTCTAAGCTCGTGATGCACTAACTGGCGTTTGAGGTCGTagtttcgcttttttttttctccagtctCTCTCCTCGATCACTACATTAACTGCTTAATGCGTCGTGGTATGTCATTTCGTGTTTAATCGTAATGGGGTTGGGGATGAGGTCGTTTAGTGGTAGTTTTGCCTCGTCAGCTGCTGTTTACCAGGTTCTGGGATGTAAGTTGCCTTTTTACACTGGTCATCTTTCCCCTAAATGCTTGTTTTTGGTGTTACATGTTCGTCCCCACTTAGCTTTGCCTTGTCTGTTTGGATAGAACCGCGGGGACCGTCTTCAgcagttttatttctttacttcgGAAGAGAACAATAATGATACAGTCACCAAACTTTGTGCACCTTTCAAATGTTGCCGACTTAAAGTCAGCCTTTACAGTGGAagctttaaagttaaaaaatgaaatggaaaaaaagcagtACATGCTGCGGTTTTGATACTGTTCATAATGTCTTTGAGTCTTTTCTGTATGTTAGCTGAATATATGATCTTATACCTGTCACGGTTTAAACTGCTTGTGCAAAAAGGAAGATTTTCACCTTTGTTTGCTCAGTTGTAGTGCTGGATTATTCACGCTAATCGGACTGAACTGTGTTAAGAGCCCCACGTTTAGCCTGAAgctatattcataaaatatttcatcCTGCTCAGGCTTCCCTCTGTATCTCTGTACTGAACCATTGTGACTTAAAATGTGATTGAACACCGAGAACAGTGTCTGAAAATCTCGAAATCAACCTGTTATTACGCTTAGATATCATATTGGATGAATTACTTTTCtgttaatgatttaaaattgaaatgtagCTCTAGCACagcacaaatgtaaaaaaaaataaatgtaataattctgTGAAGTACAATCATCACAACATTATATTTAGTTtcgaaataaaattaattctttttttttaaagagttgtTGGTGCCATATAAGTGTACGTTTGCCAACAAAAACATTAGCAGGTATACTATAAAAATGATGTGTTTGGTTTATGTGCAATAATGGCACAAGAATagtattataatacaataaaggTTGCCAAATTCTTCCATA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11980 RNF11; E3 ubiquitin-protein ligase RNF11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12122 lncRNA downstream 117963 31626970 ~ 31627999 (-) False LOC122349752
TU12127 lncRNA downstream 117963 31626970 ~ 31627999 (-) False LOC122349752
TU12118 lncRNA downstream 119547 31622674 ~ 31626415 (-) False LOC122349741
XM_043233726.1 mRNA downstream 263 31739785 ~ 31745699 (-) True get3
XM_043233764.1 mRNA downstream 11029 31728088 ~ 31734933 (-) True best2
XM_043223784.1 mRNA downstream 84359 31634401 ~ 31661603 (-) True LOC122327810
XM_043245898.1 mRNA downstream 115942 31626903 ~ 31630020 (-) True LOC122349752
XM_043245889.1 mRNA downstream 119278 31622873 ~ 31626684 (-) True LOC122349741
TU12124 other downstream 115990 31626970 ~ 31629972 (-) False LOC122349752
TU12119 other downstream 119547 31622674 ~ 31626415 (-) False LOC122349741
TU12112 other downstream 120139 31622674 ~ 31625823 (-) False LOC122349741
TU12077 other downstream 191927 31550186 ~ 31554035 (-) True G8089
TU12079 other downstream 208546 31532069 ~ 31537416 (-) True G8091

Expression Profile