RNA id: XM_043233764.1


Basic Information

Item Value
RNA id XM_043233764.1
length 3465
RNA type mRNA
GC content 0.47
exon number 9
gene id best2
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31728088 ~ 31734933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGCTCGGTGGAGCGTGATGACCGTCACTTACACGGCCAGAGTGGCCAACGCGCGCTTCTGCGGCTTCTCCAAACTGCTGCTGGCCTGGAAGGGAAGCATCTATAAGGTCCTGTACAAAGAGTTCCTGGCCTTCTTCGCCATGTACGCGGCGATCAGCATCACATACAGATTCTTCCTTGCGGACGATCAGAAGAGATACTTTGAAAAGCTGTCTATTTACTGCAACAACTACGCCAGTCTCATCCCAATGTCCTTCGTATTAGGGTTCTACGTGACACTGATAGTGAACCGCTGGTGGAGTCAGTACAGCTCCATCCCGCTGCCGGACCGGATCATGTGCACGCTCTCGGGGGGTGTTCAGGGCGGGGACGAGCACGGCAGGCTGCTGCGCCGCACGCTGATGCGTTACGTCAGTCTGTCCGCGCTCCTGATCCTGCGCTCCGTCAGCACGGCCGTCTTCAAGAGGTTCCCCACCATGGACCACGTGGTCGAAGCGGgTTTTATGACCAGAGAAGAGCGTAAGAAGTTTGAGAGTTTACACTCCCCCTATAATAAGTACTGGATCCCGTGCGTGTGGTTCACTAACCTGGCCGCCGTGGCTCGCTGCGAGGGCAGGATCAAAGATGACAACACGTACAAACTTCTTTTGGAGGAGCTGAATGATTTCAGAGGGAAGTGCAGCATGCTTTTTCACTACGACATGATCAGCGTGCCGCTGGTCTACACACAGGTCGTGACGCTGGCGGTGTACAGTTTCTTCCTGGTGTGTCTGATTGGCCGTCAGTTCCTGGACCCGAGTCAGGGTTATCCGGGTCACGATCTCGACCTCTATGTCCCTATCTTTACTCTCCTGCAGTTCTTTTTCTATGCTGGCTGGTTGAAGgtggcagagcagctcataAATCCATTcggtgaggatgatgatgactTTGAGACCAACTGGTTGATTGATAGAAACTTCCAGGTGTCTATGATGGCGGTGGACGAGATGTATGGAGATCTGCCCGTGATGGAGAGAGATCGTTACTGGAACGATTCGAACCCCCGTCCGCCGTACACAGCCGCCACGCTCTTTGTGCTGCGCAAACCCTCCTTCCAGGGCTCCACCTTCGACATGGCAATTCCCAAAGAGGACATGCATTTCCAGCCTCTGGAGGAGATCGCTGAAAACCTGGAGGAATCTGTGACACGCAATCACAACCTGGCCCTCTTTAACCGGCTGCTAGGCTCCGCCCCCTCTCCCACAGGCTTCGTGGGCGGAGCCTTACGGCGCACCTCCGCCCAGCTGCAGCGCTTGACCCGCTCCGTCAGCCCCGACCCGTCCTTCTCCGACGCGGAGGACGAGGAAGACAAGAGCGTGGGGAGGAGCACGGGATCCATGCCGTCTGGACTCGGCCTGGACACCACCCAGAGCACCATCTGCAGCTGCGGAGGACTCATCGGCACCTGTCCTCCTCTGTCCGGGGCGGAAGTCCACGCGCAAGGTGAGAGAGCTGGAGAGAAGATGACCGAAAAACAGCCACAAGTGCCAAAAATCCCGCCTCCCACGGCGCGGACGTCCACAGGCAGGAGGAGTCCTCTTGCTCTGGCGGTCAAGTCTCATTTCTGGACCTCAAACGCCACCAACCGCTCCGTGCCGGACTTCTTCTCCTTCCATCCTATCGGTGACCCGCTAAAGGTCATGACCCCCAAACCACAGCGGAGCGACGGCAAAGCAGAAGCAGCGTCTTTGCTGGCTGTCCCGTCGATTGAAGTCTCCACGTTCCCACAGAACACAGGAAGAAAGCAGATGCTGGCCGATTCACAGCTGCTGCCCTCGAACGGTCAAACCCAATGTCAGTGTGCAGGTCTAGGGTCGGAGGTCACGGGGGCAGGGGGTCCGGTCAAACAGTGACCAAATACACTGAGAAGCAGATCCtgcttatattatttttttaatacattaatttagaCAATGTTTGGAGATCATTTAACTGTATTTGTAGACTAATCATGCGACTCAACCATAATAAGCACTTAAATCCATCTAGTTTTTCTAGTTTCTTGAAAATTAATCGAgtgcatgtttatataaaatagcaaCACGTGAccaaaaattgcatttgaatatgcaacaataaattaaagaaTGAATAGGACACAAGCAACGCtcttatgaatatgaataaaaggGTTTAGATGATTATTAGGTTTGATCCAAACTGTAATGATGGGAATGATCCTCATGAGGGCAGTATTGCAGCAGTCTTCTGGTTCTTTCTGATCCATCggtgaaacacaaaacaagtaACAATATGTTAAGCAAAGCTATGCATTtattctctctctatatatagtTTACAACAgaatgagtttctagttttaCAATAGGAACAGAAAGAAGTCTAATTAAAAGCTGGGAAACTGAATTCaaggttttattaaattatattaatcattGCACAAAAGAATTCACTTACAGAAATGTTTCACGATCTCATCATCAAGGTTGAAAATATTGCCGTTAAAGAAGAAGCATCAGTTTTATTGAAGGAAATGAGGAGACACTATGCACacgttttttatatatttgctggAAAGCGAAAGTCTTACATTTCTCTAGACgactgtaaattatattttttaataaaaggaaaacGTTTCTCCCcgatatttattttctttgtctttgaatatttaaatatgtgtactattttattactaaaatatatccCTAAAACTTCACAGAGTGCAGGATGTTGAATAACCCTGACAGGTGGAGTTTATAACACTGagcaaaaaaaagatgaaataagaaataagatgATTTAGCAGTCTTTGGAATGAAGATAAGCAGtcctttaaaatgtcaaaagaaatgattttttccattttatttctgcttttctctctGCGAGGCTTGGCAGGCGCAATGTGCTTTAGGATGTCTGTGCATGCAgtatttaaaagcacaaaaagtgTTGATCTGCATCTAGATCAGAAGTGTTCGTGAGTAGGCTTGAGATGAGCGAATATCAGACGCATGAAAAATAACTggaaaataatcagaaataaagATTCGAATGATCTCCATTTCTCTTATAGAGAGGCCGAGGGAGAGCATTAAGTCCAAGTCGTGTCCTAAAACTCGCGTGGGTTGTTTATAAATGTGGAGGCCGACGGATCAAAGTTTATATAATAGGTTCAGACCGGTCAAGTACAGCTGAGCTTCAAAGCTGGAGAATATAGTAGATGCTAACAGTCCTTAGCAATGATGGCTAACCACCTTTACCAGGGAGGCGGGGagagtttttataaatatgatctCTGGTATGGATTGAAATCAAATCTGTGTGTATGCACaatttataaatgaggccccttGAGTCGGCCAGGGATTCAAACCAATCAAAATAAGCATCTTCCGCTCCATTCAAGAGActtggagtttttttttcttataaatctAGTGTATATTGATat

Function

GO: NA

KEGG:

id description
K13879 BEST2, VMD2L1; bestrophin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12122 lncRNA downstream 100089 31626970 ~ 31627999 (-) False LOC122349752
TU12127 lncRNA downstream 100089 31626970 ~ 31627999 (-) False LOC122349752
TU12118 lncRNA downstream 101673 31622674 ~ 31626415 (-) False LOC122349741
XM_043223784.1 mRNA downstream 66485 31634401 ~ 31661603 (-) True LOC122327810
XM_043245898.1 mRNA downstream 98068 31626903 ~ 31630020 (-) True LOC122349752
XM_043245889.1 mRNA downstream 101404 31622873 ~ 31626684 (-) True LOC122349741
XM_043237501.1 mRNA downstream 125647 31595831 ~ 31602441 (-) True glb1
XM_043236147.1 mRNA downstream 132793 31591137 ~ 31595295 (-) True cldnd1b
XM_043233726.1 mRNA upstream 4852 31739785 ~ 31745699 (-) True get3
XM_043233753.1 mRNA upstream 11029 31745962 ~ 31750050 (-) True rnf11a
TU12124 other downstream 98116 31626970 ~ 31629972 (-) False LOC122349752
TU12119 other downstream 101673 31622674 ~ 31626415 (-) False LOC122349741
TU12112 other downstream 102265 31622674 ~ 31625823 (-) False LOC122349741
TU12077 other downstream 174053 31550186 ~ 31554035 (-) True G8089
TU12079 other downstream 190672 31532069 ~ 31537416 (-) True G8091

Expression Profile