RNA id: XM_043233805.1


Basic Information

Item Value
RNA id XM_043233805.1
length 5673
RNA type mRNA
GC content 0.45
exon number 29
gene id wdr17
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18839950 ~ 18858945 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgttctctttctctcttcctctacCCCCATTTCTACATACACATGCACTCGCGCAGTGGGCAACAGTCGCACACAGACTATTGAAGCCGCTTTTCCTTGTAGTCGCTAACGCAGAATCCCATTCAGCTCTGCTTCTGTGAAGGCGAGAGGATAGCAGACATGGAAAGCCTGTGCTGGTTCAGCAAATATCACAATGAACCAAAGGTAAAGATGTCTCAGGTGAAGCAGGTTGGCCTGTTGGCCGCTGGATGCCAGCCCTGGAACAAAGATGTGTGTGCAGCCAGTGGGGACAGGTTTGCGTATTGTGCCACACTTGCCATATATGTGTACCAACTTGATCACAGATATAATGAGTTTAAGCTGCGAGCAATCATGTCTGAACACAAGAAGACAATCACAGCTATATCATGGTGTCCACACAACGCTGACGTGTTTGCCAGTGCTAGTGCTGATAACCTGCTCATCATCTGGAACGTAGCTGAGCAAAAGGCAGTTACACGGCTTGACAACACCAAAGgTATTCCAGCTTCTCTAAGCTGGTGCTGGAATGCAGGTGACAGCGTTGCGTTTGTATCCCACCGGGGTCCTCTGTATATATGGACCATCTCTGGGCCAGACTCAGGAGTTACAGTGCACAAGGAGGCTCACAGTTTTCTCTCGGATATCTGCCTATTCCGCTGGCATCCACTGAAGAAGGGAAAAGTTGTATTTGGACACACTGACGGCAGTCTGTCCATCTTTCAGCCAGGCTCAAAGAATCAGAAGCATGTGCTGCGTCCCGAGTCACTAGAAGGCACAGATGAAGAGGACCCCGTCACAGCTCTAGAATGGGACCCTCTCAGCACAGACTACCTGCTGGTGGCCAACATGCACAACGGCATCAGATTGCTGGACTCTGAATCTCTATCCTGCATCACAACCTTTAGTTTCCCTAGTGCCGCTGCCTCTGTGCAATGCCTGGCCTGGGTGCCCAGTGCCCCTGGCATGTTTATCACAGGGGATTCTCAAGTTGGCGTGCTGAGAATATGGAACGTATCAAGAGCGACACCTCTGGACAACTTCAAACTGAAGAAAACTGGCTTCCATGCACTGCATGTTTTAAATTCCCCACCAGCGAAGAAATCCTTTAGCACGAATTCCCCTTCCAAGAATCACTACACCTCCTCCACTAGTGAGGCTGTGCCTCCACCTACTCTTTCACAGAACCAGGccttctctctccctcccgGCCATGCTGTCTGCTGTTTCATGGATGGGGGGGTTGGACTGTATGATATGGGCTCCAAAAAGTGGGACTTCCTGCGGGATCTGGGTCATGTTGAAACTATCTTCGACTGCAAATTCAAGCCAGATGATCCAAACCTTTTAGCTACAGCTTCATTCGATGGGACGATAAAAGTCTGGGatataaacacattaactgCTGTGTATACGTCTCCGGGCAATGAGGGAGTGGTTTATTCTCTGTCATGGGCCCCTGGAGATTTGAACTGCATAGCAGGAGCCACATCAAGAAATGGCGCCTTCATTTGGGAtgtaaaaaaagggaaaatgatAACAAGATTTAATGAGCACGGGAAGAATGGTATTTTTTGTGTTGCTTGGAGCCATAAAGATTCCAAAAGAATAGCCACATGCAGTGGAGATGGATTTTGCATAATACGAACCCTTGATGGCAAGGTgttgcataaatataaacaccCAGCAGCAGTGTTTGGCTGTGACTGGAGTCAAAATAACAAAGATATGATTGCCACTGGCTGTGAAGACAAGAATGTTCGAGTCTATTATTTGGCCACTAGTTCAGACCAACCACTCAAAGTCTTTACCGGTCACACGGCCAAAGTATTCCATGTGCGCTGGTCACCTCTCAGAGAGGGCATACTGTGCAGCGGCTCAGATGATGGGACTGTTCGTATCTGGGATTACACCCAAGATGCCTGCATCAACGTGTTGAGTGGCCATACCGCTCCAGTGCGGGGTCTCATGTGGAACACAGAGGTGCCGTACCTTTTGACCTCAGGGAGCTGGGACTACACCATCCGTGTCTGGGACACCAGAGACGGCACCTGTCTAGACACTGTATATGACCATGGAGCTGATGTCTATGGTCTCACATGTCACCCCAGCCGTCCGTTCACCATGGCTTCCTGCTCCAGAGACTCTACGGTCAGACTTTGGTCACTTACTCCTTTAATTGCTCCCTTAGTGGTCAACATCCTTACTGACCACAGCTGGGATGACATCATTGGCAACACAGATCGCGCTATGGTCCCTGGAGCTCCTCCTCTCCTGTGTGGAAAAATTTCCAAAGATATCAAACAGGAGCTGGATAAACTCTCTAGTGATGTGCGCATGAAGAAGCTTCGATGGTTCTCTGAGTGTTTTTCACCACCAGGTGGGAGTCATAACCTTTGGGATCTGGTTGCTGTAATCAACGGACAGGATGATAGTCTTCTTCCACAGAACTATGGACAAGGCATCATGCACATGAAACATCTGGTCCGCTTCAAAACTTCTGAAGCACAAGAGCTGACCATAGTAAAGATGTCAAAGTTTGGGGGTGGTATTGGAGCTCCCAGTAAAGAGGAAAGGCTCAAGAATGCAGCAGAAATCCATATCAGACTGGGACAAATCCAGAGATACTGTGAGCTTATGGTGGAACTGGGAGAGtgGGAAAAAGCTCTTTCTGTGGCCCCTGGTGTCTCCATGAAATACTGGAAAAAGCTCATGCAAAGGAGGGCAGATCAGCTTATGCAAGAAGGCAATGATGATGTCATCCCATATTGCATCGCCACGGGTGAGGTGAAGAAGTTGGTGAATTTCTTCACCTCTAGAGGTCAGCTGAAAGAAGCTGTGCTGGTGGCTCAGGGTGCTTGTGAAGGCAATATACATGGTCCTCAGATCACATCAATAAACCATGCCGCAAACTCGGACAATGACAACATTGAAAAATACTGCGGGATGCTGCACAGAGTGTGTAAAGAGCTGGCGGAGTGGTATTTCCAAGATGGCCGTGCTGTGTTGGCAGCTTGCTGTCATCTAGCTGTAGACAACGCAGAACTGGCTATGGCATCTCTGATCAGAGGCAATGAGCTGGAGCTGGCAGTGTGTGTGGGCACGGTCCTGGGAGAATCAGCCAGTAAAGCCACCCACTACGTTCTGGAGCTCTTGGCCAGGAAATACATGACCACTGCCACCTGGGATCTTGCAGCCAGATTACTCCAGATTATCCCTGATAACGAGATCTTGTTAGCCAAACTGTGTGCCTTCTACCCTGGCAGCTCCGCCGAAATCAATGACCTGCACGAAAAGTGTGGTCTTCCGACTATAGAGGAATGTAAAGACCTTGCTGAAAGTGCACATGCTGAGGGAGAAATCTTCCAGACAGTAAAGTATTACCTCCTGAGCGCAGAACCAGAAAAAGCCCTTCTCATTGGGATCACATATGTCAAAGAGCAGCTGAGCTCTCCTGACTGGATGGTGGACTCTGTGTACCACATCCTAGACCTGCTGAGCTACATCAGAACAGACCGTCTCATTCTTCCAAAGTGTAGTGAAGAACGCAATGAGTTGCTTATTCTCTGTGGGTATATTGGTGCACTATTAGCTATTGGGAGACAGTATTCCAGTATAGTGCCAGCACTGTATGAATACACAAGCCAGCTGCTGAAGAGGAGAGAGGTGGCTGTGCCATTGCAGATAGAGCAGCTGTCTGTAGAGCTGGATGCCTGGAGAGCCTGCACACATTCCCTCAAAGTTGCAGACGATGCATTGTACAATCCACCATCTGAGGCCCAGAAAAAGGAGTACAGCCAGCTGTTGAGTCGGATGAGTGAGGAGCCTATCAAGGGCCTAGAGGGCCCTGACTATGTCACTGGCTCCAACTTGCCCAGCCACTCTGATGTACAGATTTCCTGCTTCACTGGCCTCAGGATACAGGGTCCAGCATTCTTCCTGGAAGATGGCAAATCAGCCATTTCGCTCAATGATGCCCTGATGTGGGCGAAAGTAAACCCTTTCTCTCCATTGGGGACGGGTATACGCCTCAACCCCTTCTGAGCACAAATACGTGAGCAGTATTCTTGCTGGTCTGGCTCTGGAAAGCCGACAAGGCATCCATTTTCTCTCCGAAAGCTTAATGtatgtcattaaacaaaatcaaattgTGTTCAAATCAACATTATTTGAGGCTTTGCCGTTCCACGCTGTGCTTACTTCATTCAGGATTGCAGCTTATATGCAAAGAATCAGCAAAAGAAAGAGTGCTGCTGTAGGGAACTTACATTACACAAGGCCAACAGTGCAAATGCGATGATATTtcttttatacaacagttcagtAAACAAGAAAtcaatataaagtaaaacaagtTCTTCTTTTGTTTCCAAAGAAGGCAAAGGCATTTTGACAAACGAGACTGATGCACTATGAACATAGGCAAGCAGAAGGATATGAACAGTAAATATCTTCTCTCAACGCACAATAACATGATGATCCACAACTAACTGTTGTATAAAGAGAGATTTATGCTGGATACAGTAATGAATGTTACATATAAAGCAGGATATTTAATGCCTTTCTTCCTCATCTTAAAACATCTTAAGTGGGTTCAGGGATTCAGGTTTAGGAGTCGCATTCAGGTCTTAGGGTTGAGATCTGTAGCCCAAAGATTGTAATTCTAGGTGGTACTGTCACTGATATTATGAAGTATGAGCACTTTCATCAAGCTGCCTGAATGTTTAGAAGATCTAGACatctttttaattcttaatgAGACTTACAGGGTATtcatctatatatttttgtttattttatttcataaaagaCACATTAATTTTGCTGCTTTGACATTGAAATTGTTTGCCATGTTCGTTGTGTTTTATATGAACTGAATAGTAAATTTTAGTAGAACCAAATACTAGAAATGAAACCTTGTGAAATGAAATATTGTAACAATCACTATTTAATGTTACTTCATTTCATTCAGGAACTGTTATGAATGGGTATACAGAGCGGGTCTGGGGCAagatatgtaatatttattaaaaagagttAATAGGACATTAAGTCTTGctgttgcattcaaaatatgtcTAGATGAACTTAGGCAATAAGTTTGAGAAAATGCACATATAGAGTGAGGAAGCAAGAGATTTCTGCTTATACATAGCTATATGCTTGGAGTTCATTTCTGAAGTTaggaaataaaagacaaaaagtgtaatttgtatttgtaaaatcatcagttatatacatacatagtaTATGAAATGGTTTGGAggaattattttatgaatttttggGTTCATGTTAGAAAATACTGATACAGAGACTATTTTCATCAAAACTGCactgtgaaatgtatttaactGTATATAGTTCTAGAATTTAGAATGTCTGAACTCTAAAGGGTGTACATAGCATATTCATATGTTAATTGTTCATACGCAAAAAAGGACAGTTACGTGTCATATATTGATCCTGAAGTAGTCGGGCATTGGATTTAGCCAGGACTGGTCCAAATTCTGCATGCTTCAAATGTCTCATGTTTATTTTGACTGATCGTGCAAGACGAGATAGAATAAGCAAGACTTTGTCAACGATAATTACCTTCTTTTTTGTGACTATGATTTgataattactattaaaaagATGAAGTGTACAAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6222 lncRNA upstream 96438 18747234 ~ 18747753 (+) True G4361
TU6221 lncRNA upstream 120896 18723075 ~ 18723295 (+) True G4360
TU6219 lncRNA upstream 127096 18716874 ~ 18717095 (+) False LOC122340556
TU6217 lncRNA upstream 128960 18714947 ~ 18715231 (+) True G4356
TU6197 lncRNA upstream 135762 18706209 ~ 18708429 (+) True G4345
XR_006248576.1 lncRNA downstream 134816 18993761 ~ 19176827 (+) True LOC122333031
TU6439 lncRNA downstream 665601 19524546 ~ 19524780 (+) True G4531
TU6463 lncRNA downstream 715466 19574411 ~ 19574760 (+) True G4553
TU6501 lncRNA downstream 856608 19715553 ~ 19777043 (+) False scoca
TU6504 lncRNA downstream 884217 19743162 ~ 19778083 (+) True G4579
XM_043233897.1 mRNA upstream 150803 18687317 ~ 18693388 (+) True cep44
XM_043233886.1 mRNA upstream 150803 18687782 ~ 18693388 (+) False cep44
XM_043233907.1 mRNA upstream 150803 18687817 ~ 18693388 (+) False cep44
XM_043233850.1 mRNA upstream 246554 18584156 ~ 18597637 (+) True galnt7
XM_043234072.1 mRNA downstream 9737 18868682 ~ 18872848 (+) True spcs3
XM_043229546.1 mRNA downstream 332148 19191093 ~ 19434722 (+) True tenm3
XM_043229727.1 mRNA downstream 332148 19191093 ~ 19434722 (+) False tenm3
XM_043229793.1 mRNA downstream 332148 19191093 ~ 19434722 (+) False tenm3
XM_043229933.1 mRNA downstream 332148 19191093 ~ 19434722 (+) False tenm3
unassigned_transcript_101 other upstream 265360 18578750 ~ 18578831 (+) True trnas-aga
XR_006251260.1 other upstream 561430 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other upstream 561430 18247252 ~ 18282761 (+) False dclk2a
XR_006251846.1 other upstream 1235350 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 3190810 15653093 ~ 15653381 (+) True G3647
TU6436 other downstream 662139 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 1253497 20112442 ~ 20112514 (+) True trnak-cuu
TU7127 other downstream 2462520 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 2731932 21590877 ~ 21620580 (+) False rnf24
TU7172 other downstream 2773270 21632215 ~ 21635052 (+) True G5037

Expression Profile