RNA id: XM_043234307.1


Basic Information

Item Value
RNA id XM_043234307.1
length 10410
RNA type mRNA
GC content 0.43
exon number 59
gene id LOC122337558
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21713527 ~ 21734713 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccttcaacttcagagagtacaccagcacaaaccacaagtacagcttcatcaaccacatctccaacaacaagcaatccaacaacatcaGCAGCTGTAACTTCTGAATCAACTACTTTTACTAAAACAATATCTAcaacttcagagagtacaccagcaGAAACCACATCTACAATTTCACAAACCACAATTACAGCTTTACCAACTGCATCTACAGCAACAAGCATTCCAATAACATCAGCAGCTGCAACTTCTGGACCCACTACTCTTAGTACAATACCTTTAATTTCAGAGGGTACAACAGCAAGAGCcacaactacagcttcatcaactGCTTCTACAACACTGAGAAATCCAACAACATCAGCAGCTGTAACTTCTGAACCTACTACTCCTACATCAAAAACAATGCCTACAACTTCAGAGGGTACAACAGTAGGAACCATAACTGCAGCTTTATCATCCGCATCTACAACAGCGAGCAAGAGTACAACAGCTGAAAGCACAACTACAGCTCCATCAGCCACATCTTTAACAATGAGCAATCTAACAAACTCAGCAGCTGCAACGTCTGATCCCACTACTATTTCGACAACAAAAATGCCTACAACTTCAGAGATTACAACAGCAAAATCCACAACTACAGTTTCATCAACTGCTTCTACAACACTgagcaatccaacaacatcaGCAGCTGCAACTTCTGATTCCACTACTCTTTCGACAACAACAATGCCTACAACTTCAGAGATTACAACAGCAAGAGCCACAACTACAGTTTCATCAACTGCCTCTACAACACTGAACAATCCAATAACATCAGCAGCTGTAACTTCTGAACCTACAACTCCTACTTCAAAAACAATGCCTACAACTTCAGAGGGCACAACAGTAAGAACCACAACTGCAGCTTTATCATCTTCGTCTATAACAGCGAGCAAGAGTACACCAGCTGAAAGCACAACTACAGCTCCATCAGCCACATCTTTAACAATGAGCAACTCAGCAGCTGCAACTTCTGTTCCCACTGCTATTTCGACAACAACAATTCCTACAACTTCAGAGATTACAACAGCAAAAGCCACAATTACAGCTCTATCAACTGCTTCTACAACACTGAGGAATCCAACAACAGCAACATCAGCAATTTCAGAATCCACAGCTATTACTTCAACAACTATGTCTACAGATTCAGGGATTACAACAGTTAAAACTACAGCTTCCACAACTGCAGCTGTATCTTCCACTATAACAACAGTTCCTGTGTCATCTGAAGCTTTGAGTACAACAGCATCTCAAACCAAATTGCTTCTAGCAACCACATCTACTGGAACTCTTGCATCAGCAGTTGTGACTTCAGAAGTAACAGCATCAGGTAGTACAACTACACCTGCAGCAAGCACAACTGCAGCTTCCATGACCACAGTGGGGCCTTCCACTACTGTGACAACAGCTTCCGAAACTAAGACTGCATCCTCAACATCTACGCTTTCCTCACCTGCGATAGTGCCTTCTACTGCTACGGCATCTCCAACTTCATCTGAATCTCCACTTCAAACCACATCAATATTTGTCAACCCTGCTCCAGTAAAGTCTACAACTTTAGAAAGCACAACTGCTCATACAGCATCGACGTCAGCTACCACAAAGTTACCTTCAACTGTTACATCTGCTGCTACCTCATCTGAAGCTCCAAGTACAAAAACAGCCGAAACCACAATTTCATTTGCAGCCACGACTACTGAAACCTCAACTCTTGCTTCACTACCAATGTCTACAACTTCAGGCAGTACACCTGCACCCGCAGCATCCAGTTTTACATCTTCCTCCTCTATGATTGGAGCTCCTACTGCTTTTTCATCTTCAATCTCATCTCAAACTACAAGTACAACAATACAAGGTCCAACCATATCCACAATTACAGCCAGAACATCTGCAATTTCATCAACAACAGAAAATCCAGCTCAAACCGCAGCTTCAATTCTAAGCACAAGCACTGCTACAGTGGCCACAACAACTGCATTCCAAATAACATCTTCACCTCTATCAAGCACAACTGTTGCTTTCACTAATACAGCTCCAACTCTAAGCCAAGCAACACTCCCTACCACAACAAATGCACCTCCAATAATTACAACTGTGTCTCTGGAGACCATAACTGTTGCTGTAACAATTATGCCCATGTCCTCATCACATGTAACTATATTTCCAACTTTAACTccaacaaaaacaactgaacCTCCAAGAACCTCAAATGCACCCATTACAACCATGACTGTTCTTCCTACCAATACAGTTCCAGTTGATATCTCAGCTACTGCTCCAAGCACAACAAGCTCAGCTGCAGCTCAAATGACAACTGCATTTCAAGTGACAACAGgagatcttttaaaaacaactgttgCTTTTACAAGTACATCTTCTGCTCCAGCCACACTTGAActttcaacaaaaacaacttcaaGCCCAAGCATGGATTCAGAAACTACAACTGCATCAACAACTACCACTGGAATTATTACAGGTCTTGCTAATACAGCAGAATTTCCAGTAGCTCCAATAACATTAGGTTcaaacacaaatacatcaaCATCACCATCATCTACAGTTCTAGGTcaaacattcataaaaacaacacCAGTTGAAACTCCTATTAGCAATACCACAACTCTGAACAATACAACAAAAGCAGATGCATTTGTTACATTTCAAAGTACTTCAAATCCAGAAACTTCAAACATATCCAAAACATTGGCATCAAATGTGTCCGGTGCAGCAACAGTCACAACCAAACTGATATTTTCCAACTTGTCATCTCTGCCCACTGAAACTTTGGTCCAAGGTGCTATTAGTACTCTAATTACATCTAGAGAGTCACAACTCAATGAATCACTGCAGATTGTCAGTTTTATCTATCAGAAAATCTCTGAAACTTCCTATGCTGtcatatttactattattttgaataatgtcaGCATACCTAAGGATCCTGAGCTAAGAAACAAAAGTTATGTTCAAGTGCaagatttaattaataatgcgttgaaCACTCTTCTAAACGAGCCTGGCAAGCAAGATTTTGAACCCAAGTCCTCCAACTTCACGAGCACTTCAAACCAGATTGATGGCAGGATGGAATACGTCTTCCAGAATGGAGATGCCATACAACCAGTCAGCTTCCTAAATGAGTTACGTGTGTCAACCACGACAACAGTGCTTCCAGAAACAACAACCAGTTTCTCTGTGACTTCACCAAACCTCATGTCTGGTTCAGCAGTGGTCACAGCCAGGCTGGTATTCAACTCGTCATCTCCAGTTCCCAGTGAAGATCTGGTCCTCAGGGCTATCAACACTCTCCGTATTTCCAGAGagtcaaagctgaatgaatcagtgaaagtggtgaatgtcacctatgagaAAATCTCAGAAACCTCATATGCTGTGGTGTTTGAAATTAGAGTGGTTAACATCAGCATGCCAGTGGACCAGGTGCTCAGAAACAACACCTACCAGGAAGTGCAGAAAATCATTGTTACTAcgcTGAACACTCTTCTGAACGAACCTGGCAGCCCACCTTTAGAACCCAAATTTTCCAACTTCACGAGCGCTACAAACCAGATTGATGGCAAGATTGGTTATAACTTCAACGGTGGAGATGCCATGCAACCAGTCAGCTTCCTAAATGAGTTACGTGTGTCAACCACGACAACAGTGCTTCCAGAAACAACAACCAGTTTCTTTGTGACTTCACCAAACCTCATGTCTGGTTCAGCAGTGGTCATAGCCAGGCTGGTGTTTAACTCGTCATCTCCAGTTCCCAGTGAAGATCTGGTCCTCAGGGCTATCAACACTCTCCGTAATTCCAGAGagtcaaagctgaatgaatcagtgaaagtggtgaatgtcacctatgagaAAATCTCAGAAACCTCATATGCTGTGGTGTTTGAAATTAGAGTGGTTAACATCAGCATGCCAGTGGACCAGGTGCTCAGAAACAACACCTACCAGGAAGTGCAGAAAATCATTGTTACTAcgcTGAACACTCTTCTGAACGAACCTGGCAGCCCACCTTTAGAACCCAAATTTTCCAACTTCACGAGCGCAACAAACCAGATTGATGGCAAGATTGGTTATAACTTCAACGGTGGAGATGCCATGCAACCAGTCAGCTTCCTAAATGAGTTACGTGTGTCAACCACGACAACAGTGCTTCCAGAAACAACAACCAGTTTCTTTGTGACTTCACCAAACCTCATGTCTGGTTCAGCAGTGGTCATAGCCAGGCTGGTGTTTAACTCGTCATCTCCAGTTCCCAGTGAAGATCTGGTCCTCAGGGCTATCAACACTCTCCGTAATTCCAGAGagtcaaagctgaatgaatcagtgaaagtggtgaatgtcacctatgagaAAATCTCAGAAACCTCATATGCTGTGGTGTTTGAAATTAGAGTGGTTAACATCAGCATGCCAGTGGACCAGGTGCTCAGAAACAACACCTACCAGGAAGTGCAGAAAATCATTGTTACTAcgcTGAACACTCTTCTGAACGAACCTGGCAGCCCACCTTTAGAACCCAAATTTTCCAACTTCACGAGCGCAACAAACCAGATTGATGGCAAGATTGGTTATAACTTCAACGGTGGAGATGCCATGCAACCAGTCAGCTTCCTAAATGAGTTACGTGTGTCAACCACGACAACAGTGCTTCCAGAAACAACAACCAGTTTCTTTGTGACTTCACCAAACCTCATGTCTGGTTCAGCAGTGGTCATAGCCAGGCTGGTGTTTAACTCGTCATCTCCAGTTCCCAGTGAAGATCTGGTCCTCAGGGCTATCAACACTCTCCGTAATTCCAGAGagtcaaagctgaatgaatcagtgaaagtggtgaatgtcacctatgagaAAATCTCAGAAACCTCATATGCTGTGGTGTTTGAAATTAGAGTGGTTAACATCAGCATGCCAGTGGACCAGGTGCTCAGAAACAACACCTACCAGGAAGTGCAGAAAATCATTGTTACTAcgcTGAACACTCTTCTGAACGAACCTGGCAGCCCACCTTTAGAACCCAAATTTTCCAACTTCACGAGCGCAACAAACCAGATTGATGGCAAGATTGGTTATAACTTCAACGGTGGAGATGCCATGCAACCAGTCAGCTTCCTAAATGAGTTACGTGTGTCAACCACGACAACAGTGCTTCCAGAAACAACAACCAGTTTCTTTGTGACTTCACCAAACCTCATGTCTGGTTCAGCAGTGGTCATAGCCAGGCTGGTGTTTAACTCGTCATCTCCAGTTCCCAGTGAAGATCTGGTCCTCAGGGCTATCAACACTCTCCGTAATTCCAGAGagtcaaagctgaatgaatcagtgaaagtggtgaatgtcacctatgagaAAATCTCAGAAACCTCATATGCTGTGGTGTTTGAAATTAGAGTGGTTAACATCAGCATGCCAGTGGACCAGGTGCTCAGAAACAACACCTACCAGGAAGTGCAGAAAATCATTGTTACTAcgcTGAACACTCTTCTGAACGAACCTGGCAGCCCACCTTTAGAACCCAAATTTTCCAACTTCACGAGCGCAACAAACCAGATTGATGGCAAGATTGGTTATAACTTCAACGGTGGAGATGCCATGCAACCAGTCAGCTTCCTAAATGAGTTACGTGTGTCAACCACGACAACAGTGCTTCCAGAAACAACAACCAGTTTCTTTGTGACTTCACCAAACCTCATGTCTGGTTCAGCAGTGGTCATAGCCAGGCTGGTGTTTAACTCGTCATCTCCAGTTCCCAGTGAAGATCTGGTCCTCAGGGCTATCAACACTCTCCGTAATTCCAGAGagtcaaagctgaatgaatcagtgaaagtggtgaatgtcacctatgagaAAATCTCAGAAACCTCATATGCTGTGGTGTTTGAAATTAGAGTGGTTAACATCAGCATGCCAGTGGACCAGGTGCTCAGAAACAACACCTACCAGGAAGTGCAGAAAATCATTGTTACTAcgcTGAACACTCTTCTGAACGAACCTGGCAGCCCACCTTTAGAACCCAAATTTTCCAACTTCACGAGCGCTACAAACCAGATTGATGGCAAGATTGGTTATAACTTCAACGGTGGAGATGCCATGCAACCAGTCAGCTTCCTAAATGAGTTACGTGTGTCAACCACGACAACAGTGCTTCCAGAAACAACAACCAGTTTCCTTGTGACTTCACCAAACCTCATGTCTGGTTCAGCAGTGGTCATAGCCAGGCTGGTGTTTAACTCGTCATCTCCAGTTCCCAGTGAAGATCTGGTCCTCAGGGCTATCAACACTCTCCGTAATTCCAGAGagtcaaagctgaatgaatcagtgaaagtggtgaatgtcacctatgagaAAATCTCAGAAACCTCATATGCTGTGGTGTTTGAAATTAGAGTGGTTAACATCAGCATGCCAGTGGACCAGGTGCTCAGAAACAACACCTACCAGGAAGTGCAGAAAATCATTGTTACTAcgcTGAACACTCTTCTGAACGAACCTGGCAGCCCACCTTTAGAACCCAAATTTTCCAACTTCACGAGCACTACAAACCAGATTAATGGCAAGATGGGTTATAACTTCAACGGTGGAGATGCCATGCAACCAGTCAGCTTCCTAAATGAGTTACGTGTGTCAACCACGACAACAGTGCTTCCAGAAACAACAACCAGTTTCTTTGTGACTTCACCAAACCTCATGTCTGGTTCAGCAGTGGTCATAGCCAGGCTGGTGTTCAACTCGTCATCTCCAGTTCCCAGTGAAGATCTGGTCCTCAGGGCTATCAACACTCTCCGTATTTCCAGAGagtcaaagctgaatgaatcaatgaaagTGGTGAATGTCACCTATGACAAAATCTCAGAAACCTCATATGCTGTGGTGTTTGAAATTAGAGTGGTTAACATTAGCATGCCAGTGGACCAGGTGCTCAGAAACAACACCTACCAGGAAGTGCAGAAAATCATTGTTACTAcgcTGAACACTCTTCTGAACGAACCTGGCAGCCCACCTTTAGAACCCAAATTTTCCAACTTCACGAGCGCTACAAACCAGATTGATGGCAAGATTGGTTATAACTTCAACGGTGGAGATGCCATGCAACCAGTCAGCTTCCTAAATGAGTTACGTGTGTCAACCATGACAACAGTGCTTCCAGAAACAACAACCAGTTTCTTTGTGACTTCAACAAACCTCATGTCTGATTCAGCAGTGGTCATAGCCAGGCTGGTGTTTAACTTGTCATCTCCAGTTCCCAGTGAAGATCTGGTCCTCAGGGCTATCAACACTCTCCGTATTTCCAGAGagtcaaagctgaatgaatcagtgaaagtggtgaatgtcacctatgagaAAATCTCAGAAACCTCATATGCTGTGGTGTTTGAAATTAGAGTGGTTAACATCAGCATGCCAGTGGACCAGGTGCTCAGAAACAACACCTACCAGGAAGTGCAGAAAATCATTGTTACTAcgcTGAACACTCTTCTGAATGAACCTGGCAGCCCACCTTTAGAACCCAAATTTTCCAACTTCACGAGTGCTACAAACCAGATTGATGGCAAGATTGGTTATAACTTCAATGATGGAGATGCCATGCAACCAGTCAGCTTCCTTAATGAGTTACTTGTGTCAACCACGACAACAGTGCTTCCAGAAACAACAACCAGTTTCTCTGTGACTTCACCAAACCTCATGTCTGGTTCAGCAGTGGTCACAGCCAGGCTGGTGTTCAACTCATCATCTCCAGTTCCCAGTGAAGATCTGGTCCTCGGGGCTATCAACACTCTCCGTAATTCCAGAGagtcaaagctgaatgaattagtgaaagtggtgaatgtcacctatgagaAAATCTCAGAAACCTCATATGCTGTGGTGTTTGAAATTAAAGTGGTTGACATTAGCATGCCAGTGGACCAGGTGCTCAGAAACAACACCTACCAGGAAGTGCAGAAAATCATTGATATTAcgCTGAACACTCTTCTGAACGAACCTGGCAGCCCACCTTTAGAACCCAAATTTTCCAACTTCACGAGTGCTACAAGCCAGATTGATGGCAAGATTGGTTATAACTTCAATGATGGAGATGCCATGCAACCAGTCAGCTTCCTTAATGAGTTACGTGTGTCAACCATGACAACAGTGCTTCCAGAAACAACCAGTTTCTCTGTAACTTCACCAACCCTCATATCTGGTTCAGCAGTGGTCATAGCCAGGCTGGTGTTCAACTCATCATCTCCAGTTCCCAGTGAAGATCTAGTCCTCAGCGCTATCAGTACTCTCCGTAATTCCAGAGagtcaaagctgaatgaatcaCTGAAGGTGGTGAATGTCACCTATGAGAAAATTGCAGCAACTTCCTATGCTGTCATCTTTAAATTTAATCTGAGTAATATCAGCATGTCAAAAGATCCTAATCTAAGAAACGGCACATACCTACAAGCTCAGGGTGTCATCAATAATGCGTTGAACACTCTTCTGAATGAACCTGGCACACAAACTTTAAATCCCAAGTCAACCAACTTCATAAGCACTTCAAACCAATTTGACGGCAAGATGGATTACATTTTTCAGGATGGAGATGTTATACAACCAGTCAGCTTCCTAAATAAACTAATCCCACCGACAGTCTTAACAACAGCCAGTACTCTGACAACTACTCCACTGATAGTGCGTGGCAAAGCACTTATATTCATTCGCCTCGTGTTTGTCACACTGGCCCCCCTGCCAAATCCAGATAGGGTTGTTGAGGTGGCCAACACTCTGCTTAAAACACGTCTGGCAACCAAACAAGATACCACAACACAAGACCTGAGTGATTCTGTGAGCTTAGTCAATGTCACATATACAAaaatcaatgAGACGGCATATGCTCTCAACTTTGGATTTGAAATCAGCAATATAACTATGTCTGAAAAAGTTGAACTCAGGAATGGTACCCATCTGTTAATACAAGACTCTATAAACTCATTGctatGCAAGATCCTCCTCAGTAACTCGTCAGTTCCTTTCATTAAGTTCCAAGAAGCTGATTTCACGGGCAATTCCACTGTGATTCAGGCCAAAGTAGAGTATGTTTTCTCACCAAATGACTTCACGCAACCCAGTATTTTTGTTCAGGAACTTCAACTTGCTGAAGTGAATGCACTGACAACAAGCACAACTTCACCACCAATCTTGATTAGGAAGGCAATTATTAAGATTCGTCTTGACTTTATCACATTGGGTCCAAGACCAAGTAAGGATAATGTTCTAGAGGTGGTTAAAACAGTGCTGGCTACAAATCTCACAACTAAACTAACCGTGAAAACAGTAAGCGTGAGTGATCCTGTGACCTTGGAGAATGTCGACTATTTAGcaattaatgACACTGCCTACGCACTCATATTCGCATTTGAAATCAACAAAGTATCACTGACAGAGTCAAGCAGGAATGAAGCCTACAAAGTAATCCAagataaaacaaataacttGGTGACCCAGATCCTAAAAGACCCCTCAGTTAGTCTGCTCATTGTTCCTGATATCAATGATGATCTCACCGTGATTGAGGCCAGTGTTACGTATGTTTTCTCACAATATAACAGCAACTCTGCTGCTGGTTTATTGGTTGGTACCCTTTTCAAGGTTTTTACCACACCAGTTCCAACCGTAACCACTACAATGTCAAACAACGGTACAAACGCAGCATGGGTTGTTGCCATCATTGTCCCCTGTGCTATTATCATCGGGCTCGTACCTTGCTGGATTCTCCTTTGCTGTCTGCTGTGTGGGTGCTGTGCAGCAATCAGAAGACGTTGGCACAGAAGACGGTCGTACAACGTACAGTACACTACACGAAACAGCCTCTTCTAGAGAGTTCGGAGAGACTTGACAAAATCAGGACTGAACACCAATAGAAATGATAGATTATGGATATTCAGTATGCAATTCAATACTGTCTCTTTTTTTAGTAGTGAAAGAAATATGTTAATTCTTAttttacaaagtatttattttattaagcctGTATTGCTAGACAAACAGGTTCTCTGTAAAATGTtctaaatgtgatattttaattCTTCCTATAgtgtataataaaattgtattttattgtattatttatttgtatttattgtaatattctgTTTATGTTTACAATTAATAAGCTTTTGGAAAGCATTGGTTTATTTAGCATTACACAGTTCAGAGACAAATGTGCAACATTGGAATTATagctattatttattcatactcCATGCACTTTATTAATGTGAAGGAAAGGTAAAGCAAGTTCATGATGTAAAGGAAATTTATGTAAGTCATTggcatgaaaatataaaaaactgtaataaaaatactaaagaaTACAGAACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7183 lncRNA downstream 92946 21612918 ~ 21620581 (-) True G5047
TU7205 lncRNA downstream 162292 21550352 ~ 21551235 (-) False si:dkey-37g12.1
TU7131 lncRNA downstream 302956 20906170 ~ 21410571 (-) False ctnna2
TU7094 lncRNA downstream 994637 20718232 ~ 20718890 (-) False LOC122349798
XR_006251499.1 lncRNA downstream 994654 20711230 ~ 20718873 (-) True LOC122349798
TU7636 lncRNA upstream 309189 22043902 ~ 22044137 (-) True G5327
TU7670 lncRNA upstream 550447 22285160 ~ 22287133 (-) False LOC122348696
TU7671 lncRNA upstream 550505 22285218 ~ 22287133 (-) False LOC122348696
TU7696 lncRNA upstream 613801 22348514 ~ 22382972 (-) False G5366
TU7704 lncRNA upstream 613801 22348514 ~ 22382972 (-) True G5366
XM_043235637.1 mRNA downstream 959 21707938 ~ 21712568 (-) False si:dkey-56e3.3
XM_043235557.1 mRNA downstream 959 21707940 ~ 21712568 (-) True si:dkey-56e3.3
XM_043235721.1 mRNA downstream 1250 21707940 ~ 21712277 (-) False si:dkey-56e3.3
XM_043235188.1 mRNA downstream 22154 21687227 ~ 21691373 (-) True mogs
XM_043235930.1 mRNA downstream 33997 21676087 ~ 21679530 (-) True LOC122342104
XM_043244789.1 mRNA upstream 3309 21738022 ~ 21756866 (-) True muc13a
XM_043244797.1 mRNA upstream 27168 21761881 ~ 21799744 (-) True LOC122348907
XM_043244807.1 mRNA upstream 74078 21808791 ~ 21812589 (-) True LOC122348917
XM_043244817.1 mRNA upstream 92843 21827556 ~ 21832934 (-) True LOC122348927
XM_043244828.1 mRNA upstream 98649 21833362 ~ 21847155 (-) True LOC122348936
TU7069 other downstream 1026787 20683842 ~ 20686740 (-) True G4958
TU6966 other downstream 1344433 20367139 ~ 20369094 (-) False timm10
XR_006250953.1 other downstream 1400579 20290873 ~ 20312948 (-) False zdhhc5a
TU6776 other downstream 1573597 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU7268 other upstream 39921 21774634 ~ 21796438 (-) False LOC122348907
unassigned_transcript_106 other upstream 149405 21884118 ~ 21884190 (-) True trnat-ugu
TU7673 other upstream 524726 22259439 ~ 22328929 (-) True G5356
TU7773 other upstream 804971 22539684 ~ 22550950 (-) False atp11a
TU7878 other upstream 1179187 22913900 ~ 22916405 (-) True G5468

Expression Profile