RNA id: XM_043233850.1


Basic Information

Item Value
RNA id XM_043233850.1
length 3067
RNA type mRNA
GC content 0.46
exon number 12
gene id galnt7
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18584156 ~ 18597637 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATCACACATCCGTGTGTGTTCAGAGAGCTGCGTggcgcgcgcacgcacgcacgcgacTGCTGGCTTTTTTTTGTATCGCTGTCTTTTCGTTACTGAATCATAAAGAGGACAGTGGGGGTTTAATTGAATAAAGGAGcaaggagagcgagagagagagagagagaaagaaggaaacaGGGAGTGAGAGGGAGGGACTCGATGTGGCCATACAGGCTGCggagagtttatttatttgcgctggctcctctttttctttctttcttattattTGTCAACTGATTTTCCAAAATGAGGTTAAAAGTTGGATTCATCCTTCGAAGTTTACTGGTCATCGGCACGTTTTTGGGGCTGGTTTTGCTTTGGTCTTCGCTAACACCGAAGGCGGTCGACGATAACCCGTTTGCTGGCGTGCTGGCAGGACGAGATGCAGGTAAACTCTTGCAGCCCAACCTTCCTAGTAATGACATGGCTGACCAGTTCAAGCCAGTTGTTCCTTGGCCCCACGTTGAAGGAGTTGAGGTCGATCTGGAGTCCATCCGCCAGAAAAACGGTGACAAGCCAAACCCCGCTTTCAAAGCCCAGAACCAGCAGAACGTCATCCAGAAGCAATATATCACCTTCAAGCCTCACACCAACGTGTACAGTGAACCTGTGTTGAAGAAAGGAATTCTGGGCAACTTTGAGCCTAAGGAACCTGAACCTCAGGGGGTCCAGGGCGGACCGGGAGAGGGCAGTAAAGCATTCGTACTGGGACCGGAGTACAAAGATTCTGTTCAGGCCAGCATTAAGGAATTCGGTTTTAATATGGTAGCCAGCGACATGATCTCTCTGGATCGAACCGTCGGCGACTTACGGCACGAAGAGTGTAAATACTGGCACTATGATGAAAACCTCCTCACGTCCAGCGTGATCATTGTCTTCCATAATGAGGGCTGGTCCACCCTGATGAGGACGGTGCACAGCGTCATCAAAAGAACCCCAAGGAAATACCTGGCTGAGATCGTCATGATTGATGACTTCAGTAACAAAGTTCATCTTAAAGAGAGGCTTGAGGAGTACATAAAACAATGGAATGGGTTGGTCAAACTGTTCCGCAATGAGAAGAGAGAGGGTCTGATCCAGGCCAGGAGCATAGGAGCCCGCAAAGCCACTCTGGGACAGGTGCTGATCTACCTCGATGCTCATTGTGAAGTCGGGGTGAACTGGTATTCCCCATTGGTGGCCCCCATTTCAAAAGACCGAACGGTCTGCACAGTACCGTTGATAGATTACATAGACGGCAATGATTATACCATAGAGCCACAACAGGGTGGGGATGAGGATGGTCTGGCGCGAGGCGCCTGGGACTGGAGCCTCCTGTGGAAAAGGGTCCCTCTGAGCAGCAGGGAGAAGGCTAAGAGAAAGCATAAGACAGAGCCTTATCGGTCTCCTGCGATGGCTGGAGGACTCTTCGCAATAGAGAGAGAGTTCTTCTTCGAGCTGGGCCTCTATGATCCAGGCCTTCAGATTTGGGGAGGAGAAAACTTTGAGATCTCCTACAAGATATGGCAGTGTGGTGGGCAGCTTCTGTTCGTGCCATGTTCACGGGTGGGGCACATCTACCGTCTGCAGGGCTGGCAGGGAAACCCACCTCCTGCTCATGTAGGCTCGTCCCCCACACTTAAGAACTATGTGCGGGTGGTGGAGGTGTGGTGGGATGAGTATAAAGACTATTTCTACGCAAGTCGACCTGAGACCCTCACGCTGGCCTATGGAGACATCAGCAGCTTGAAAAAGTTCAGAGAGGAACATCGCTGCAAGAGCTTTAAGTGGTTCATGGAGGAGATCGCTTATGACATCCCTCAACATTACCCACTGCCTCCAAAGAATGTGGAGTGGGGAGAGATCCGTGGGTTTGAGACCAGCTACTGCATAGACAGCATGGGCCATACCAACGGCGGTAATGTCGAAATCGGGCCCTGTCATAGAATGGGTGGAAATCAGCTCTTTAGAATTAATGAAGCGAACCAGCTCATGCAGTATGACCAGTGCCTGACGAAGGGGGGAGACGGGACTGCCGTCATCATAACACACTGCAACTTAAACGAGCACACGGAGTGGAGATATTTTAAGGATCTACATCGATTCACACATATACCTACGGGGAAATGCTTGGATCGCTCTGACGTCTTGCACAAAGTTTATATAGCCGACTGTGACAACAGCAAGAGCTCACAGAAGTGGGAGATGAACAACATTGTAGCCGTTTGAGAGCCAGTCTCAAATGTGCTTCAAGGATAAACACTGACTACAGCAACAGGTTTTACCAGTATACACGTGACTAATTAAGTTTTAGTCATCACCCGAATAACTCTGAACTCTGAtcataaacaaacttttttcctCCATTGAAGACAATGTTTACATCGGTTCATCCCCAGTGTCCATCGCATGGGTTTTTCTTTGGAATCTGTGGATTGGAGGGGTCTACCTAATAGAATGTTTTTTCCCTTTCACAGAATGTGCACAATGTGTGCTGAGATGAATTGATACCACTTTTGTTGCTGCTCCATTATCAAATACAGGTTGTCCATCAAGTACTGggatgcatatatttttttaacactggACCTTCATTATGTTTGAGATGACAACCTGCCACTTGAACGTCTTTGGCACAATGGCACATTTTTTGCCATATATTATGGGTAAAGAACGGgagtggagagagaaaaggaaaatgGGGATATAGggttaatggaaaaaaaaaaaaaaaaaaaaagtgatgcatttatttttgtctactgcattaaaacatttgcttGGTTGGGGGAATAgatatttgtttgtatgtgaAAATTAACGTTTGATTATAATACTATTGGCCAAAAATCATCTTGAGCAAAGTTATGTTTTATGGGCAAGAATGATTGCagtgtatacattttttgtttgttttgtacaatGTAAATAcgattatttctaaattaacattttgaaatacgATGGGCTTCCCAATGAAGGTGTAAATATCTAACTTATAAATGGTTGttttcaagaaaataaatggaACATTTTTACCAGTC

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6140 lncRNA upstream 272815 18309934 ~ 18311341 (+) True G4296
TU5942 lncRNA upstream 369072 18213305 ~ 18215084 (+) True G4166
TU5832 lncRNA upstream 685612 17896588 ~ 17898544 (+) False lsm6
TU5873 lncRNA upstream 837057 17745851 ~ 17747099 (+) True G4105
TU5867 lncRNA upstream 936694 17644218 ~ 17647462 (+) True G4099
TU6182 lncRNA downstream 719 18598356 ~ 18599659 (+) True G4331
XR_006250297.1 lncRNA downstream 96532 18694169 ~ 18717089 (+) True LOC122340556
TU6214 lncRNA downstream 96546 18694183 ~ 18694573 (+) False LOC122340556
TU6197 lncRNA downstream 108572 18706209 ~ 18708429 (+) True G4345
TU6217 lncRNA downstream 117310 18714947 ~ 18715231 (+) True G4356
XM_043241787.1 mRNA upstream 6569 18431138 ~ 18577587 (+) False galntl6
XM_043241715.1 mRNA upstream 6569 18431140 ~ 18577587 (+) True galntl6
XM_043237260.1 mRNA upstream 257295 18304771 ~ 18326861 (+) True sparcl1
XM_043237245.1 mRNA upstream 257295 18319781 ~ 18326861 (+) False sparcl1
XM_043237253.1 mRNA upstream 257295 18320632 ~ 18326861 (+) False sparcl1
XM_043233897.1 mRNA downstream 89680 18687317 ~ 18693388 (+) True cep44
XM_043233886.1 mRNA downstream 90145 18687782 ~ 18693388 (+) False cep44
XM_043233907.1 mRNA downstream 90180 18687817 ~ 18693388 (+) False cep44
XM_043233820.1 mRNA downstream 242313 18839950 ~ 18858945 (+) False wdr17
XM_043233828.1 mRNA downstream 242353 18839990 ~ 18858945 (+) True wdr17
unassigned_transcript_101 other upstream 5325 18578750 ~ 18578831 (+) True trnas-aga
XR_006251260.1 other upstream 301395 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other upstream 301395 18247252 ~ 18282761 (+) False dclk2a
XR_006251846.1 other upstream 975315 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 2930775 15653093 ~ 15653381 (+) True G3647
TU6436 other downstream 923447 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 1514805 20112442 ~ 20112514 (+) True trnak-cuu
TU7127 other downstream 2723828 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 2993240 21590877 ~ 21620580 (+) False rnf24
TU7172 other downstream 3034578 21632215 ~ 21635052 (+) True G5037

Expression Profile