RNA id: XM_043234072.1


Basic Information

Item Value
RNA id XM_043234072.1
length 745
RNA type mRNA
GC content 0.44
exon number 5
gene id spcs3
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18868682 ~ 18872848 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGCTTCCGAATCATCTTTTGAACGCCTCACTTCCTGCTTCGAACCTCCGCTCGGAGCGTTTCGATATATCTTTTGTTTTGCGTTGCATCGCTTTAGTTTGATCAGAACCAGGCTGAATCATGAATACGGTGTTGTCGAGGGCGAACTCGCTCTTCGCCTTCTCTCTCAGTGTGATGGCGGCTCTCACTTTCGGGTGCTTTATTACCACAGCCTTCAAAGACAGAAGCGTACCGGTGGATATACACGTATCCAAAGTCATGATtaAAAATGTAGACGACTTCACAGGACCGCGAGAGAGAAGTGACTTGGGCTTTGTGACttttgacatttctgcaaatttgcagCCAATATTTGACTGGAATGTGAAGGAGCTCTTTCTTTACCTAACTGCTGAATATTCAACCAAAAGCAATACACTCAACCAGGTGGTGCTATGGGACAAGATTGTGTTGAGAGGTGACAACACCAAACTAAACCTGAAGGATGTTAAATCCAAGTACTTCTTCTTTGATGATGGGAACGGTCTAAGGGCAAATAAGAACATCACTCTTACTCTCTCATGGAATGTGGTGCCAAATGCTGGAATCCTGCCATTGGTCATGGGATCAGGACACAAGAGTCTCGCCTTTCCTGAAACATACGAAACGGCAAAGAGCTACTGAACTGTTCCAGTCCATCCCAAatcatatttgtaaatgttgtgCTCTGTACGggttttaataaaagttaacaAATTGTTTTAA

Function

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0005787 signal peptidase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K12948 SPCS3, SPC3; signal peptidase complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6222 lncRNA upstream 120929 18747234 ~ 18747753 (+) True G4361
TU6221 lncRNA upstream 145387 18723075 ~ 18723295 (+) True G4360
TU6219 lncRNA upstream 151587 18716874 ~ 18717095 (+) False LOC122340556
TU6217 lncRNA upstream 153451 18714947 ~ 18715231 (+) True G4356
TU6197 lncRNA upstream 160253 18706209 ~ 18708429 (+) True G4345
XR_006248576.1 lncRNA downstream 120913 18993761 ~ 19176827 (+) True LOC122333031
TU6439 lncRNA downstream 651698 19524546 ~ 19524780 (+) True G4531
TU6463 lncRNA downstream 701563 19574411 ~ 19574760 (+) True G4553
TU6501 lncRNA downstream 842705 19715553 ~ 19777043 (+) False scoca
TU6504 lncRNA downstream 870314 19743162 ~ 19778083 (+) True G4579
XM_043233820.1 mRNA upstream 9737 18839950 ~ 18858945 (+) False wdr17
XM_043233828.1 mRNA upstream 9737 18839990 ~ 18858945 (+) True wdr17
XM_043233802.1 mRNA upstream 9737 18844190 ~ 18858945 (+) False wdr17
XM_043233805.1 mRNA upstream 9737 18844191 ~ 18858945 (+) False wdr17
XM_043233897.1 mRNA upstream 175294 18687317 ~ 18693388 (+) True cep44
XM_043229546.1 mRNA downstream 318245 19191093 ~ 19434722 (+) True tenm3
XM_043229727.1 mRNA downstream 318245 19191093 ~ 19434722 (+) False tenm3
XM_043229793.1 mRNA downstream 318245 19191093 ~ 19434722 (+) False tenm3
XM_043229933.1 mRNA downstream 318245 19191093 ~ 19434722 (+) False tenm3
XM_043230009.1 mRNA downstream 318245 19191093 ~ 19434722 (+) False tenm3
unassigned_transcript_101 other upstream 289851 18578750 ~ 18578831 (+) True trnas-aga
XR_006251260.1 other upstream 585921 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other upstream 585921 18247252 ~ 18282761 (+) False dclk2a
XR_006251846.1 other upstream 1259841 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 3215301 15653093 ~ 15653381 (+) True G3647
TU6436 other downstream 648236 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 1239594 20112442 ~ 20112514 (+) True trnak-cuu
TU7127 other downstream 2448617 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 2718029 21590877 ~ 21620580 (+) False rnf24
TU7172 other downstream 2759367 21632215 ~ 21635052 (+) True G5037

Expression Profile