RNA id: XM_043234731.1


Basic Information

Item Value
RNA id XM_043234731.1
length 3719
RNA type mRNA
GC content 0.51
exon number 28
gene id pnpla6
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22385513 ~ 22411698 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATAGGGCAGTCTAAAAAGCTGCAAATGGTCTGATAAAGAACGTTAATCActtcttacattttcttttcaggtgtttatacaaatattatatcgTTCATTTAAGTCAGTAAgctaaaaaaccaaaaaaacaaactaaagaaCGTTTGGTAAATAACGTTGGGGGAGGGAATCAGCGAAAGTCATGATCCTGAATTCTGATTGGTCTGCTTGTCATCCCTGATTGGTCGCTGCACTGACTGGGCGGGATTTACGCAGAGCTCTGAACGGATGTTTCCGGTTTGACCGTTGTTTGACAGATCAGGACGGACAGTCGCTTCTAGCGCCTGTCGTTGATGGCCCAGCTGTGTGTTGAGGTAGAATGGGACAGAGCACATCGGGCCCAGAGTCTGCAGAACCTCCCCAGcTGGACAGATTCGGAAACATCAAGAGTTTAGTGGAGGATCAACTACAGACCAGCATGGTGGTGGGAATTTTAATCGGCGCTGGAGTCGCCATCGTCCTCATCGCTGTCCTCATATTTTTTGTCCTGCGCAGGATGCAGCTCCGCAaactTGAGGCTCAGGAAGCCCCGAAGTACCGTTTTCGTAAAAGAGACAAGGTCTTGTTTTATGGGAGGAAGATTATGAGGAAGGTGTCTCAGTCCACCTCTTCGTTAGTGGGCTCCACTTCCTCCTCCAGGCCCCGCctcaaaaagaaacagaagatgcTGAACATCGCCAAAAAGATCCTGCGCTTTAAGAAGGAAGTGCCCACTCTGCAGATGAAGGAGCCTCCTCCGTCAGTGCTGGAGGCAGATCTCACAGAGTTCGACGTGGCCAATTCTCACCTGCCGTCCGAGGTGCTCTACATGCTCAAGAACGTGCGTGTGCTGGGTCACTTCGAGAAGCCGTTGTTTCTGGAGCTGTGCAAGCACATGGTGTTTCTTCAGTTCCAGCAGGGCGAATATGTCTTCAGACCCGGGCAGCCTGACAGCAGCATATATGTGGTACAGGACGGCAAGCTGGAGTTGTGTCTTACTGGACAGGATGGAAAGGATGGAGTGGTCAAAGAGGTTTACCCTGGGGACAGTGTTCACAGTCTGCTAAGCATCCTTGATGTCATCACAGGTCACCAGAGACCTTATAAAACCGTCTCGGCGAGAGCGGCAGAAGTGTCCACTGTCCTCAGGCTGCCTGTTGAGGCTTTTCTGTCCATCTTTGAGAAATACCCAGAGAGCCTTGTGCGAGTGGTTCAGATCATCATGGTCCGTCTTCAGAGAGTGACTGTTCTAGCCCTGCACAACTATCTGGGGCTCACCAACGAGCTCTTCAGCCATGACATGCAGGCTCGTCCCTCTCCTGTCTCTCCTCATCCGACACGCTCCAGTCCGGTACGACACAGCAAACGCTTTGGCAGTCTCACGGTTCCTGATAAACATCGTGAAGCTGCCGTCCAAAGTGCTACTGGTGGGGATCACGGGAAGGATGGTGGCACAACACCGACCCTCAGTAGGACCATATCCATGCCTGTAGACATCGCAGGAATTCAGAAGAGTCTGCGTTCAGATTTCGATATGGCTTATGAGAGAGGCCGTATCTCTGTATCTGCTGAGGATGGAGAAGACAATCTGCTGAGGAAAGCTCCACCTGCTTTCACTAGAGAGCAGCGGGAGAGGAAGGTGACCGTGGATGAGGTTCCTTCAAGTGTGTATTTGTATCCTGAGGAGGAGCCTGGAATGGATAACATTTTTAGTCCATTTCAAGGACGACCCAACGCTACACTGTTCGAGGAGGCCCAGAAAGAGATTCTCAAACTCATGAAGATCGAGGACCCTGCTCTGCTGAATGGAAGGGTGACGTTTCATCACGCTAAAGCTGGATCCGTGTTAGCCAGACAGGGAGACCAGGATGTGAGTCTGCATTTTGTTCTGTCCGGATGTCTCCATGTCTATCAGAAGATGATCGACAAGCAGGAAgcggtgtgtttgtttgtgaccCAGCCGGGTGAGATGGTTGGACAACTGGCTGTACTCACAGGAGAGCCGCTCATCTTCACCGTCAAAGCTGAGCGTGATTGTACCTACCTCAAAATCTCCAAATCTGACTTCTACGAGATCATGCGTGAGCAGCCAAGTGTAGTCCTCAGTGCAGCTCACACCGTGGCTATCCGCATGTCCCCGTTTGTACGGCAGATGGATTTCGCCATTGACTGGATGGCTGTAGAAGCTGGACGGGCCCTGTACAGGCAAGATGATCAGTCGGACTGTACCTACATTGTGCTCAATGGACGACTGCGTTCTGTCATCCGAAAAGCCAACGGGAAGAAGGAGCTGGTTGGGGAGTATGGCAGAGGAGATCTCATTGGAGTTGTGGAGGCTTTGACTCGGCAGCCTCGTGCCACCACAGTCCATGCAGTCAGAGACACTGAGCTGGTGAAGCTTCCAGAAGGAACGCTCAACAACATTAAGAGAAGATACCCACAGGTGGTGACACGCTTGATCCATCTGCTGGGGCAGAAGATTCTGGGGAACCTCCAGCAGCCCCGTGGACCTTTCTCAAGTTCTGTTCTGGGTGTGCCGAACGTGGCGTCGAGTCCAGACGTCACTAACCCAGCTAGCAATCTCTCCACCGTGGCCGTGCTTCCCGTTTGTGATGATGTGCCAATCAATGCCTTCAATTTGGAGCTCAGCCATGCCCTCAGCGCCATAGGACCAACCCTGCTGCTAACCAGTGACATTATCAGGGAGAGACTTGGAGCTTCTGCTTTGGACAGTATTCATGAGTACAGGCTATCAGGTTGGTTGGCTCAGCAGGAGGACATTAATCGTATAGTGCTGTATCAGACGGACAGCGGTATGACCCCATGGACTCAACGCTGTATCCGACAAGCTGACTGTATCCTCATTGTGGGGCTTGGAGACCAGGAACCTGCACTCGGAGAGTTGGAGCAGATGTTGGAGAACACAGCGGTACGGGCCCTAAAGCAGTTAGTTCTGCTGCACCGTGAGGACGGGCCGGGTCCGTCAAGAACCGTTGAATGGCTGAACATGCGAAGCTGGTGCTCTGGACACCttcacctaaagtgccctcgtAGAGTTTTCTCACGAAGAAGCCCCTCCAAATTGCGAGAGGTATATGAAAAGGTTTTCGAAAAGACTGCAGACAGACACAGTGATTTCTCACGGCTGGCCAGAGTACTCACAGGAAACAGCATAGCCCTCGTGCTGGGCGGAGGCGGAGCCAGGGGCTGCTCTCATGTTGGTGTAATCAAAGCCATGGAGGATGCAGGAATTCCCATCGACATAGTTGGAGGAACTTCCATTGGCTCATTCATTGGTGCTCTGTATGCCGAGGAGAGAAGTGCTGTTAGGGTCAAGCAGAGGGCGAGAGAGTGGTCCAAGGCAATGAACTCCGTATTCAAAACCGTTCTGGATCTAACTTATCCAATCACGTCCATGTTTTCTGGCTCTGCCTTCAACACCAGCATCTCCAAAGTCTTTGAGGACAAACAGATCGAGGACTTGTGGCTGCCTTACTTTAACGTGACCACAGACATCACGGCTTCTGCTATGCGTGTTCATAAAGATGATCTCGGCATGATGTCCACAAAACTACGGAGAGCTACAGTTTTGGATCCCCCTTTCATTCTCACTCATCTGTTTCCTGTTGTTTACTGTCCCACCCTCCTCTGTTTCTCTCCACGTCCTGTCCAGTTTTGATTTACTCTCCATCTTCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7696 lncRNA downstream 11544 22348514 ~ 22382972 (-) False G5366
TU7704 lncRNA downstream 11544 22348514 ~ 22382972 (-) True G5366
TU7670 lncRNA downstream 107383 22285160 ~ 22287133 (-) False LOC122348696
TU7671 lncRNA downstream 107383 22285218 ~ 22287133 (-) False LOC122348696
TU7636 lncRNA downstream 350379 22043902 ~ 22044137 (-) True G5327
TU7709 lncRNA upstream 764 22412462 ~ 22413930 (-) False G5368
TU7712 lncRNA upstream 764 22412462 ~ 22414007 (-) True G5368
TU7752 lncRNA upstream 22915 22434613 ~ 22438354 (-) True G5395
TU7716 lncRNA upstream 33260 22444958 ~ 22446648 (-) True G5369
TU7764 lncRNA upstream 114418 22526116 ~ 22526422 (-) True G5404
XM_043244839.1 mRNA downstream 58224 22332974 ~ 22336292 (-) True c1h19orf67
XM_043244559.1 mRNA downstream 101155 22288682 ~ 22293361 (-) False serhl
XM_043244568.1 mRNA downstream 101295 22288682 ~ 22293221 (-) True serhl
XM_043244473.1 mRNA downstream 106995 22273986 ~ 22287521 (-) True LOC122348696
XM_043244482.1 mRNA downstream 113578 22272818 ~ 22280938 (-) False LOC122348696
XM_043235610.1 mRNA upstream 128450 22540148 ~ 22602648 (-) False atp11a
XM_043235593.1 mRNA upstream 128450 22540148 ~ 22602648 (-) False atp11a
XM_043235601.1 mRNA upstream 128450 22540148 ~ 22602648 (-) False atp11a
XM_043235583.1 mRNA upstream 128450 22540148 ~ 22602648 (-) True atp11a
XM_043235618.1 mRNA upstream 132265 22543963 ~ 22602648 (-) False atp11a
TU7673 other downstream 65587 22259439 ~ 22328929 (-) True G5356
unassigned_transcript_106 other downstream 510326 21884118 ~ 21884190 (-) True trnat-ugu
TU7268 other downstream 598078 21774634 ~ 21796438 (-) False LOC122348907
TU7269 other downstream 621754 21724387 ~ 21772762 (-) True G5108
TU7258 other downstream 671451 21721504 ~ 21723065 (-) False G5104
TU7773 other upstream 127986 22539684 ~ 22550950 (-) False atp11a
TU7878 other upstream 502202 22913900 ~ 22916405 (-) True G5468
XR_006251794.1 other upstream 1360925 23772623 ~ 23916448 (-) False LOC122351696
XR_006251793.1 other upstream 1360925 23772623 ~ 23916446 (-) False LOC122351696
TU8134 other upstream 1621165 24032863 ~ 24034499 (-) False G5624

Expression Profile