RNA id: XM_043234736.1


Basic Information

Item Value
RNA id XM_043234736.1
length 2014
RNA type mRNA
GC content 0.44
exon number 1
gene id lipt1
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22412157 ~ 22414170 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCATttgagtttttgtttgtgtttcaaaaCGTAGAAATATTACGGtattattaagttaaattaataacGTATACCTCCGGGCGAATCTgtgcaacaaacaaacaaacaaacaaacaaaccgcatttcattcattctactgtatttatttttattagcacttttaacaaccaCAGATCAAACGCATTCTTAAATAACGTGTTTTTTAGGGTCAACATGGCATACATTTAACGTGCAACTTATTTTTGCGTCGTGTGGGACTCTTATTATGCTTTGACAGGAAACGGTATCCTGTCGACCCGGTTGTTAACGGTAATGTTCCGCTGCTGCAGGTTTGGGAATAACAGTGCCTCAACTTTGCAGATCGGTATTTCGTGCGCGTTATTGGTCAAACGTTACATTTACCCACAGCGGAAATTAATAGTCTGTGGTTTATTCGTGCTTTACAGACTTTTGTAGAGTTAGCCATGATTTTGAGACTGTCAAACAGGGCGTGCGTCCCCTTCGGGTCGGTCCGCTTCAAAAGCACTTTGTCAACCTTCTTCGACGAGACGGGAAAAGCTGGTATCGTCCTAAAATCTGCATCAACTgacatatttgaaaatctggccTTAGAAGACTGGATTCACGATCACGTCGATCTGCAAAACAGAAGCGTGTTGTTGTTATGGAGAAACTCCCCCGTGGTTGTCATAGGCAGGCATCAAAACCCCTGGCAGGAGTGTAACCTGCCCTTGACGAGGCGCTTGGGAATCCCTCTGGCGAGGCGTCGCAGTGGAGGCGGGACCGTTTTCCACGATTTCGGAAACCTCAACATGACCTTCTTCACCTCCAAGAAGAAATACGACCGTCACCGAAACCTCAGGGTCGTTACTAGCGCGCTAAAAGCGCTGAGACCCGACCTAGATGTCGCAGCGACGGACAGATTCGACATTTTGTTAAATAGCCGTTACAAAATATCAGGCACTGCCGCGAAACTAGGCAGAAGCTCTGCGTATCATCACTGTACGTTGCTGTGTTCTGTTGACCGTTCATTATTGTCCTCGGTGTTAAAGAGCAACGCTTCTGAAGTTATCAAAAGCAACGCTACCCCAAGCGTCCCTTCCCCCGTCAAGAACCTCTTAGACGTGGATCCCACTCTTGACTCTGACTCTATCGTGGATGCCATTGCTTCCCAGTACAGCCGTGAGTTTGGCTTTGACGGCCCAGGCGTCACGGTCGACCCCTCTCAGGAAGCTCTCATGCCTGGCATTCGCAACATGGCGCGGGATTTGCAGACGTGGGAGTGGATTTACGGCAGGACTCCAAAATTCAGCGTTTGCGCTTTGCTTGCGGTGGATGATGTGACTGTTAAGCTCGACATGGACATCAAAAACGGCGTTGTGGAACAGTGTGCTGTGGGTGTCCCGGAAGACTGGCTCCCTCCGGAGATGGTGAATGAGTTCACGTCAACTCTGAACGGCAGCAGATACTGTCCGACTGAAACCGCGGCGCTGGTGGCGGCGTTCGTGAGGACCGTTTCGGTGACTGGGGATGTTGCCGAGAGGATTCATAGATTGTGTGCCGGTGTGGTTTCAGTGATGTGAATAAAATTGTCCGGAATAAACGCTATGTGATGCTTAACTTCAAAATCTTTGAAGTGGTCCCCTGCGCAGTCACACTTTACagatatgaaaaacaaataatgctgCTAATTCTGTGATCAAACTTGGAATTTTAAGCTTCTGGAAGACTTTAGAACAGACATAATTCACGTGCAATTGAAGTGCTTGCCAATATTAATAGAGCAATAATGTAagaataaagattattttattgatGAATTCTATACAAAATCTTaagatgtgtatttttatataaatgcgttgctttgcattaattaaaatttaaatattaatatatgtagcACAGGTGCATTTGTGTACTTCAACGTtgttgatttttctttcatgtcaaaaatcattagaacaTGAAGATCGTGCtccatgaagatgttttgtaaattacctacccta

Function

GO:

id name namespace
GO:0009249 protein lipoylation biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K10105 LIPT1; lipoyltransferase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7385 lncRNA upstream 24629 22385266 ~ 22387528 (+) False G5178
TU7390 lncRNA upstream 24629 22385266 ~ 22387528 (+) True G5178
TU7341 lncRNA upstream 176628 22232347 ~ 22235529 (+) True G5159
TU7309 lncRNA upstream 342023 22068067 ~ 22070134 (+) True G5134
TU7304 lncRNA upstream 370045 22041866 ~ 22042112 (+) True G5132
XR_006251667.1 lncRNA downstream 111952 22526122 ~ 22530488 (+) True LOC122350977
TU7448 lncRNA downstream 125100 22539270 ~ 22539472 (+) True G5206
TU7477 lncRNA downstream 301366 22715536 ~ 22733117 (+) True G5223
XR_006251146.1 lncRNA downstream 321264 22735434 ~ 22741631 (+) True LOC122346574
TU7479 lncRNA downstream 322771 22736941 ~ 22741614 (+) False LOC122346574
XM_043239329.1 mRNA upstream 28188 22371229 ~ 22383969 (+) False map2k7
XM_043239339.1 mRNA upstream 28188 22371229 ~ 22383969 (+) False map2k7
XM_043239348.1 mRNA upstream 28188 22371415 ~ 22383969 (+) True map2k7
XM_043244208.1 mRNA upstream 41545 22338779 ~ 22370612 (+) True pkn1a
XM_043244226.1 mRNA upstream 41545 22338780 ~ 22370612 (+) False pkn1a
XM_043236811.1 mRNA downstream 468 22414638 ~ 22426760 (+) True eif5b
XM_043236821.1 mRNA downstream 468 22414638 ~ 22426760 (+) False eif5b
XM_043236831.1 mRNA downstream 12814 22426984 ~ 22448303 (+) True arhgef7b
XM_043236841.1 mRNA downstream 12817 22426987 ~ 22448303 (+) False arhgef7b
XM_043236851.1 mRNA downstream 19520 22433690 ~ 22448303 (+) False arhgef7b
unassigned_transcript_107 other upstream 527649 21884436 ~ 21884508 (+) True trnak-uuu
TU7172 other upstream 777105 21632215 ~ 21635052 (+) True G5037
TU7152 other upstream 791577 21590877 ~ 21620580 (+) False rnf24
TU7127 other upstream 1050882 21321465 ~ 21361275 (+) False LOC122348864
unassigned_transcript_103 other upstream 2299643 20112442 ~ 20112514 (+) True trnak-cuu
unassigned_transcript_108 other downstream 644862 23059032 ~ 23059103 (+) True trnae-cuc_5
TU8005 other downstream 1132272 23546442 ~ 23554625 (+) False G5559
TU8004 other downstream 1132326 23546496 ~ 23554625 (+) False G5559
TU8228 other downstream 1870601 24284771 ~ 24293329 (+) False G5649
unassigned_transcript_109 other downstream 2253365 24667535 ~ 24667607 (+) True trnar-ccg_14

Expression Profile