RNA id: XM_043234861.1


Basic Information

Item Value
RNA id XM_043234861.1
length 4391
RNA type mRNA
GC content 0.42
exon number 8
gene id apbb2b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11867305 ~ 11910014 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGGGggtaaaaaaagagagagattgagCGTAGAGAGGTGAGCTGCATGTTTTTAACAGAGCAGAGAATGAGACGAGGAGGTGAAAATCTGTAGAAGAGGGGTACCGGCATAATGCTAtagcaggaaaaaaacacattactttATAGATAGAGAGGGATTTTGCATATGTAGCGCGAGATAAGGACACCCggatattaaaatgtcatgtgttCCGCTGTGACACCCCTGCCAAAGCCATCGCGACAAGTCTGCACGAAATCTGCTCCAGGATCATGGCAGAGCGCAAGAATGCCAAAGCTATGGCTGGAGGATCCTTACAGGACAGAACACATGCTGGGCTCGACGTCCCTCTACAAGCAGAGTTCCCCACACCAAAGACTGAACTGGTGCAGAAATTCCAAGTGTTATATGTCGGCATGATGCCCGTTGCCAGACCTATAGGCATGGACATCCTCAACGGTGCAATAGATAGTTTGATAACATCATCAAATCGAGATGACTGGGTCCCTGTGATGCTGAATGTAGCCGATGCAACAGTCACAGTCATCAAAGAAAAGgaggaagaggaggtcCTGGTGGAGTGTCGTGTGCGCTTCCTGTCGTTTATGGGAGTTGGGAAAGATGTGCATTCATTCGCATTCATCATGGACTCTGGGAACCAGCACTTTGAGTGTCATGTGTTTTGGTGTGATCCTAATGCTGGCAGCGTGTCAGAGGCTGTTCAGGCAGCATGCATGTTGAGGTATCAGAAGTGTCTGGTGGCACGCCCTCCATCTCAGAAAGCCTGCTCACAAGCACCCCCTGCTGATTCGGTCACCCGCCGCGTCTCCACCAGCGTCAAACGCGGAGTTCTTTCCCTCATCGACACGCTCAAACAGAAGAGACCAGTCACTGAGCTCCCCCAGTGATCTGACACACAAGCACGCATTCTCACCGTCACGCTCTGCATGCCAATAGCTATCAGAATGTCCTGTACATATCTGTCCAGTCACTCGATGGAGACGAAGCAAAGCTCGAGGAAATTCTGAAACAAAGTAATTATCAAATGAGCTGATGCCAAGAAGTACACCCTTTACTCGCACACTCACGAACACGCACTTACTCCAGTATCTACAAGCCTCTCTCTTCCGTCTCCCATATGTCGGTCATGCGTATATCTGTTGGGACTGTACCCAACAGGCTTCGCCCATCTGTAACACCACCCTATCCGGACAAAGCCTGCTCTAAAGAGATCGTTTGAAGAAAGCTTGTGTAGTGCGGCTGCTTCGATCGATCGAGCTTCTTCATATCGTCACAGTTCATCGCTGTCGCATGACCGTATGTGTGTTTAGAGGAGCTTGGTGCTGCTTTATTTGCTAACGGATAAAAGCTATTTCTGTTGCATTCTTTACTATCctgataaacacaaaataagaagaATGAGAGGAACTGTGCATCGTGTTCCATTCAGTGTCGGATGAAGGATGTTATTACTTGATATCTTCTGATCAAGGTGCTCCAATGTTCAGTGCTCAAAATTTTAGTCCGCTGTTGATTGGCTGCAGTGAAGCGACGTATGAAGCACAACTCGTGTATAAGTTGCTTCCAAACTAAGCATATCTCTATCGGCCACCGCAGTAAATTCGCATGATTAATTGAGAAATCGTTCGCCCTCGAGTGAAATTACCAATGAAATGGATTCCTATTAAAACATTGGTAAATGTGACCGTACCTTTTGGCGAAGAAACAACCCTACGTTACATTAGCATTGCATACATGTCTACAATGAAGTCTTGCAACCAAATTGCGGAGAAAAAAACGCCACTGCACAAAGTTCGAGTTCAAGTGCACTTTTCCAAGTGGGAAGATGGAAATCCCAACTCTTTCAGCTGAGTGAAACGTGTTTAACGTTGAAATACATCGCCATGTTTTCTTCAAGAAGCTCTGCTGACATATTCATCTCCGCCAGAAGTTGTTGAGGAGGCTTGGAAAAGACGCAGATATGAAACAAATCATCAGACTTCCCATAAACTTGTTGTGCATTAACACAGGTGGAAGGACATTACCTGTTCAGTTTAGTGTGTAGATGTAAAGTATGaatgtgctttttatatttccaaagtgaaattgcctcttttttttttttcctttgaaagAGAGAATGTTTTGGAAGAGAATTGAATTACTCAAGGAGCAAAATACAGGAGGCGGCAACTTTGCCTAGAGTCAAACAGTTCAGTCGTGTCAATTCTGCTTTGAACCCCAGCGTAGTGCTTACTTCCTCAAGAGGCTCTCCAGTGACTGAATGTCAAAAAATATCTGACTAATAGGAACTATTTGCAACAGATCCAagttagtgaaaaaaaaactcctgAGCTATTTCAGTTCTGGCATCCATTCCTGACGTTTGGATGTCATTAGTGGCTCTACATGTCCTGGTTGCGCTTCACAAACATTTCCCCCCCCCCGCACGTACCTACGTGGTCTTGCTGTACTCCTAGACTTACCCTTTCTTTCACAAGGGTTTTGACGAGTCActtatgtgtgtacatatagtATCTATATATAGCAAACATCATATCATAAGgctttattttttgaatttcagatacttttattttgtcatgttttgtttgttttggtcatACTTGCCTTGGCATGTCTCGTGATCCCGTTTATTCTGgccatactgtaaaaaaaaaaaaaaaaaaaaatcacgtatGTGTTGTAGATAAACCAActgacaaaacaaagaaaagaagacGAGTGAAAGATGGTAGAGATTgtgaatatgaatttattttatggtcCTTTTTAGGAGAGCTAGCTCTAGAGGAGGAGATGTGAACCGTAAGTGTCTATCTATGCATTCTTTTAGCTCCGAGGAagatttgagagagagagagagaaaaaaaaaaaagacacattgcCTTGCATGTCCTGGGACAATTTAAGAAGAAAAACTGTACTGAAcagaaatgatattttttattttatttattctattttatatcGGTATATACTGGTTTCATTGTGATGTATCATAAGCTTCGACATTCTTTACTCTGTATTGAAcaacaaatcaaacaaatgacAAATTCAAACCACAGTACGGTTACTCTGGAGAGCTGTTTATCTCAGACGCTGACTGCCGTAACACTTTGAAAGGCTTTGTAGGATCTCTACATTCTGCCCAAACCAACAGTAGATGTAGGTAAGCTTCGGTCTGCTTCAGAATGCACTACATGGACAACAGTATGTTAAACCTAACAAGTATTATCAGTAGCAACCGGTGCATGAGATCAACCTCAAACTACTTCATTCTGAGATTTTAACTTGAGATTCAGCGTTACCCAATGCGGGgtctcaaaacacatttttaaaagttttaacaagatgtttttttgttttttttttaaagtctcgTGACACAACTTTTTAACGCGATGCTGTTTAAAAATGCGGCGCCCGATGTAGGGTCTCGAAACTTTAAAccgatttattttaaaaacaacaagacATCAATCTATAACGCATAACACATTTACGATGGCAAACCATTAAAAAGCCGTGCAGTGAAACAAATTCTTGGCAAATTAGGACACAGCCGAAAGTGATGCATCAGCAAAAGGTGTCAATGTTTTGTGTTGTAGTACACATACATTTGGTCATTTAGGGTATGTTGCGTTCCAGGATGATCACAGTCAGATTTTTCACAAAGATttgaatttgtatttgtttgggCAGTATGTAGATGTTTAGCTAGCATTGAGTAGTGTATCCTGAAGACACAAGGCCTCCGCTTTCACCCTGCAGGTAATCAGAGTGTTGAAATGACCTGACACAAATCAATCCGCCTGTGTACTGCACTCCCGCGCTCCCCCCTCTTATTATCTCTTCTGCAGTTTTGAAGAATCGCATGTTggttttttgtttcgtttttgtttttctcatgaGAATTTCACTTATACTGTTTTCCGTTGGATTATTTTTGGATTCCCTCCTTTTTGGGCGAGGGGTTTCACAGTGAATAAGATTCAGTCACATCTTATGTTTCAAAATGAATTCAGTGGCAACCGGCAAAGTCAGCTGTTACATGCAAAACCCGAAAGAGGGAGGAGGATTATGGTTAGTGTAGTCCAGTACAATAATTCAGCGTAGAATCATCATTCTCTCGTTAGCCAAGAATAGTGTGTTTGACTCTAGTGTTCTTGCATGGTGAATCACTCTGATCGCCGATTATCAGAGGAAATCTCATCACGAGGATTAACAAGCTAAGAATTAACACTACTGGCGAAATACACTCAAACACACGTTTTTGTGGAAACGTTGGCTTTCTCTGCTCTACACTAATTTGTACaccatataaatgtaaactgttgtgaaaataaatggcaTATCACAAAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3851 lncRNA upstream 52280 11848131 ~ 11849277 (+) True G2648
TU3864 lncRNA upstream 53545 11793561 ~ 11848012 (+) True G2651
TU3842 lncRNA upstream 118522 11773971 ~ 11783035 (+) False tmem192
TU3840 lncRNA upstream 130972 11769443 ~ 11770585 (+) True G2645
TU3816 lncRNA upstream 138223 11744876 ~ 11763334 (+) False G2625
TU3945 lncRNA downstream 10725 11920739 ~ 11922365 (+) True G2711
TU4009 lncRNA downstream 338484 12248498 ~ 12250778 (+) True G2767
TU4024 lncRNA downstream 380108 12290122 ~ 12290466 (+) True G2782
TU4037 lncRNA downstream 427628 12337642 ~ 12348940 (+) True G2790
TU4039 lncRNA downstream 427628 12337642 ~ 12348940 (+) False G2790
XM_043246999.1 mRNA upstream 36419 11852225 ~ 11865138 (+) True uba6
XM_043247524.1 mRNA upstream 57497 11837606 ~ 11844060 (+) True LOC122350793
XM_043236257.1 mRNA upstream 65855 11821259 ~ 11835702 (+) False fnip2
XM_043237186.1 mRNA downstream 17427 11927441 ~ 11958156 (+) True prss12
XM_043236192.1 mRNA downstream 220296 12130310 ~ 12156578 (+) True spock3
XM_043236206.1 mRNA downstream 220296 12130310 ~ 12156578 (+) False spock3
XM_043236232.1 mRNA downstream 220394 12130408 ~ 12156578 (+) False spock3
XM_043236185.1 mRNA downstream 220452 12130466 ~ 12156578 (+) False spock3
TU3862 other upstream 61391 11837631 ~ 11840166 (+) False LOC122350793
unassigned_transcript_4 other upstream 591093 11310393 ~ 11310464 (+) True trnap-agg
TU3404 other upstream 920201 10845012 ~ 10981356 (+) False LOC122347856
XR_006251287.1 other downstream 734665 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 734665 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 776231 12686245 ~ 12690270 (+) False dnah6
TU4187 other downstream 803518 12713532 ~ 12717506 (+) False dnah6
TU4406 other downstream 1293239 13203253 ~ 13205688 (+) False rhoh

Expression Profile