RNA id: XM_043235301.1


Basic Information

Item Value
RNA id XM_043235301.1
length 4195
RNA type mRNA
GC content 0.44
exon number 20
gene id kitb
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11654904 ~ 11666734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagagagagagagagagtgtgtcagTTGTGTATGAGAGTCCTACTAATGTACAGACACACGAACACAGACTGACGGAATGGGGCACATTTGGTTTTTATGTACAGTTCTACTTTTATTCGCCATACCTGGAGGGTGGTTTGAACCTGTTATCACTCCCAATGCCACTCATCTGGTGATACCAATAGGTGGACAACTGCAAATCAGCTGTCATGACGATGCAGAGGCGAGCAAGGTGCAATGGATGCGGGAAAAAGGTCGGAAAATTGATGGAGGGCTAGAGAAAGATGGAGCTCGTATCATCCACCTCACCTCTACACAGGTACAGCACATGGGCCGCTACACCTGTAAAAACACTCAAACAGAAGAGAAGAGCTCCATCTACATCTATGTGAAAGATTTAGAGAACCCTTTTGTGCGGCCCGTGGTAGGTGGCCTTTTGGTGAGGGAAGGAGAGGATGGCACCCTTCCTTGTTTAGTAACAGATCCAGCCGTCGGTCATCTGTCTCTTCTGACCTGCGGTGGCTCTGGTCTCCCAGCAAGCCTCACCTTCAGTGCTCATCCTCAGAGAGGGATCACCATCAAAAACGTCTCCAGAGCTTTTGAGGGCTGCTACATTTGTGCGGGAGAGATGAATGAAAAACTTGTGAAATCAAGCCAGTATAACTTGGTTGTGCTGCCAGTCCCGGAGGCGGAGCCATCGATCAGCCTATCCAGAATCGAAAATGTGATTTTGATCCAGGGTCAGGAGTTTGTGCTCAACTGTAGCACCATCAACAGCAACTTTGATATCAGCCTGAGCTGGAGTATCCCTTCTGAAACGATTGCAGAGAAAAGCCAAAAATCAAACATCTTGCCGGGTTCTCGAGAATATCAGCGCTCAGTAGGACTGCACATCAAATCTGTGAAGATGAATGACTCAGGAGTTTATCGCTGTATTGCGAGGAATGAGAAAGGTGTCTCCATGGCAACTGTCAATCTGGAGGTTTACGAGCATGGTTTCATTAACCTTACGGAGCGAGAGGACAGGGTGGTGGAGGTGAGGGAGGGAGAAAGCCTGACCCTTAGCGTGGAGATGACTTCATACCCCAGTCCCATCGAAGTCTACTGGATGTATAACAATCAACAGCTCAAAAACACATCTGAACACGTCATTACACTGCACAACCAGCAGtacagGTACGTCAGTGAACTGAGGCTGGTTCGAGTTCATGGATCAGAGGGCGGGATCTACACAttctcagccaatcacagatATGCATCTGTCAATCAGTCATTCACTGTCCATGTTATATGTAAACCCGTGATAGTTTCCCAGGAGGGGCCAGTTGATGGACAGGTGCGGTGCGTCGCTTCAGGATATCCTGTCCCAAAAATATCTTGGTATTACTGTGAGCCACCACATACACGGTGCTCACATCTGTTGAATGCGACACTGGCAGATGAGGAGTTTGCAGTGGTCAAAGTGTCAGGGGCAGAATTCGGACGAAGCGAGGTGGATAGTCGACTTAATGTCAGCAAAGGAAAATTTCACACACTTGAGTGTGTGGCAACAACCCAGGGAGAGCAGGCGTACACCCTCTTTTCCATCAGCGAGAGAACAGTGCCTCATAAACTCTTCACCCCTCTGCTCTCTGGAGTCGTGTCTACTTCTGTTCTGCTCAGCTTCTTTCTGGTGGTTCTGCTCTACAAATACATGCAGAAACCCAAATATGAGATCCACTGGAAGGTGATCGAAAGTTTTGATGGCAACAATTATACCTACATAGACCCAACGCAGCTGCCTTATGACCCCAAATGGGAGTTTCCAAGGGAGAGACTGCGTTTTGGTAAAGTCCTCGGCTCTGGAGCATTTGGTAAAGTGGTGGCAGCTACAGCATATGGACTTTGCTCAGCAGACACAGTGACCACTGTAgctgtaaaaatgctaaaacCGAGTGCTCACTCCACTGAGAAAGAGGCTCTAATGTCGGAGTTAAAGGTTCTGAGCTACATCGGCAATCATATAAATATTGTCAACTTGCTTGGTGCCTGTACAGTCGGAGGCCCCATTCTGGTGATCACAGAATACTGTTGCTATGGCGACCTATTGAACTTTCTAAGAAGAAAGCGGGATGCATTTTTCAGTTCCAAAACAGGCGATGGATATTACAAAAATCTGCTCAGCCAAACACAGCCTTCAAGaGAGGGCACTGATAATGGATACATGCCCATGAGGTCGTATCAGAAGAGGTCGACTCAGACAGGTACGTGCATCTCAAAAGAATGCAAGCAACATCCGTTATCGTACACTTTTCATTCTGTATCATCTCTCTCAGAATGGTGCGATGACAAAGATGATCTCTCTTTGGATACTGAGGACTTACTCAGCTTCTCATATCAAGTGGCTAAAGGCATGGACTTCCTCACTTCTAAAAATTGTATTCACAGAGATCTGGCTGCCAGGAATGTATTACTGACTCAGGGTCGGGTAGCAAAGATATGTGATTTCGGTTTGGCACGTGACATCACAAGAGATTCCAGCTACGTCCTGAGAGGAAATGCACGCTTACCAGTTAAATGGATGTCCCCAGAGAGCCTGTTTGCTTGTGTGTACACTTTTGAGAGTGATGTCTGGTCCTACGGCATTCTGTTGTGGGAGATCTTCTCTCTGGGTAACACGCCATATCCGGGTATTCCAGTCGGTTCCACATTCTATAAGATGATACAAGATGGATACAGAATGAGTGAACCTGAGTTTGCCCCAATTGAAGTTTATGAGGTAATGAGATGGTGTTGGAGTGCTGACCCTCTGAAGAGACCAACCTTCAAGAAACTGGTGGAAAGGACTGAACTCCTGCTGTCGGAAACCACCAGACATGATTACTTGAATCTCAGCACTAGCAGCAGCTGCAAGGCGTTTGTTCCTCCAGGCCTGCAGAGGGCACAAAGGCTGAGTTCTGTGGGCAGCTCGACAGCCTCAACTCAACCCCTGCTGCAGGCAACAAATGATGTTTTTCTGGAGAATGAAAGCATATAAACGGCATCTCATCTCCTTGTTTTGCCTCGTTTTCTCAGTAGGTTTGACCTAAAAGCCTTATCCTCCATTTAAGTTCTAACTGTAATTGTGGCATTTAAGGGCATCTCCTGCTTTGGCTCAGTGCATCTCCATTAACATCGTCTtccattatatttcaaattactCAAGACGCATGTCATGTAActgttaatgtatttttctaaatgcaGCTGGGCTCCGTTTATATGGTATTGATCTGCATAGTATTTTGAGTGCATGAGCAGCTACCGTGGCCAGGCGAGCATTTAGATATAGAACCTAATGTTACCTCATCAGATAAATGACCAGCTCTACTGATGACATCATTGTGTAGTGACCTGTGATGATGTCGTGTTGTGTATTCTTTTGTCTTTGACCTGAAAGTACGTCTCAACTGAACAGTAAGGTAGGTAAAAAACAAGGTGGTTTCCGGTTTAATGTGTCACTATCTAAAGCACTTAATACCAACGAATGGAGGTTTTCGTTTATGCATTTGTACTATTTTCAGCATGCGATTACTCTCGAGTGAGTGCTATATTGCATTGATGTATCTACGATGAGATCCCCATCTCAGCTTCAAGTTGTACTTACTGGTATAACTGTCATATTTATTAACAACCTAGgatgtgttcatttttttgaccatttttgtTTGAGTTTGGACTTGAAATTTTGAGCTGTTgagaatgtgtatatatatacaagttGTTTGTTGCTGTGTAAAACTGAGATAATCATATTTAGATTGTACATTGCGCCTTTAATAACTGACTATAGGCTCCATTCTTCAAAAGTGGCTAACCTGGCTACATTACCTGGAGTAAGACAAGTATCTGTTCTGAAGCATGCTTAAAAGGTGATAAACATATCTGGAATAATTATCTTATTAATTCTGATACGTTTATGCATTCCAAGTTATTCCAAAAATGAATCCAGCTGACTTAACCACAATTGAAAGATGGAATGTTGGTctcaaaaagaatgaaaatgtttttgaacgtTGACTGTGACAAATACCTGCTATGAGATTTGACTCTGTAAATATGTGAAGTGTCAGCTATTTTTTCAACTTTTAGAGTGTTATGTCTGGAAAAGGCAAGTAGTAAATGCGCCTGTTTTTATACAGAatcattgaaaataaatgaaaagttgtaAAAGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3770 lncRNA downstream 118357 11533320 ~ 11536547 (-) False ptprdb
TU3711 lncRNA downstream 244124 11407565 ~ 11410780 (-) False zgc:195282
TU3709 lncRNA downstream 244124 11407608 ~ 11410780 (-) False zgc:195282
TU3710 lncRNA downstream 244170 11407608 ~ 11410734 (-) False zgc:195282
TU3713 lncRNA downstream 258373 11395734 ~ 11396531 (-) False LOC122343263
TU3821 lncRNA upstream 45239 11711973 ~ 11712523 (-) True G2630
TU3823 lncRNA upstream 46710 11713444 ~ 11715227 (-) True G2631
TU3824 lncRNA upstream 49399 11716133 ~ 11716935 (-) True G2632
TU3826 lncRNA upstream 52994 11719728 ~ 11720175 (-) True G2634
TU3827 lncRNA upstream 53567 11720301 ~ 11721030 (-) True G2635
XM_043235336.1 mRNA downstream 12696 11636160 ~ 11642208 (-) True lap3
XM_043235512.1 mRNA downstream 23261 11608561 ~ 11631643 (-) False rbm47
XM_043241056.1 mRNA upstream 26783 11693517 ~ 11710803 (-) True ecpas
XM_043247889.1 mRNA upstream 58393 11725127 ~ 11729264 (-) True polr1e
XM_043225008.1 mRNA upstream 116901 11783635 ~ 11788666 (-) True apela
XM_043236331.1 mRNA upstream 149742 11816476 ~ 11818872 (-) True tma16
XM_043249937.1 mRNA upstream 180273 11847007 ~ 11850655 (-) True grhprb
TU3761 other downstream 142071 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 156546 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 600963 11053154 ~ 11053941 (-) True G2401
TU3478 other downstream 673538 10953875 ~ 10981366 (-) True G2382
XR_006251247.1 other downstream 840829 10810310 ~ 10814075 (-) False LOC122347618
XR_006250806.1 other upstream 675001 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other upstream 676715 12343449 ~ 12365995 (-) False gria2a
XR_006251305.1 other upstream 1237465 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 1237465 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 1487752 13154486 ~ 13159246 (-) False smim14

Expression Profile