RNA id: XM_043235336.1


Basic Information

Item Value
RNA id XM_043235336.1
length 2221
RNA type mRNA
GC content 0.45
exon number 13
gene id lap3
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11636160 ~ 11642208 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGTAGCTGCGCCTGTGAGCGATTTTCAACCTTTTATGTCACGTGTGGCTTTCTAAGGTTTATCTCCATCACGGTTGAGTCTGTTTCATAACTTTAGGAATAATGTTGATACCGTTCAGAAGGGCGTTGCTTACTGTAATCCGAAAACACAACTGTAGACTTTTTTCAAAGTCTAGTACCGCTTCCAGCACAAGAAAAGGTTTAGTTCTCGGCGTGTATGAGAATCAGCCAAACAATGACGGGATACATTTCACAGAGGCAGCGGCGGCATTTGACACCTCGATCTCTGGAAAACTGTCAGAAATGCTGTCGATGTCTGGACCTCCCCTGAAAAAAGGCAAGAGCAGGATCTTCTATGGTTTGCATCAGGATTTCCCTAGTGTAGTTGTGGTTGGTCTTGGTAAGGGCGACGCAGGTGTGTGTGGAAAAGAAAACTGGGACAACTGTAAGGAAAACATTCGTGCAGCTGTATCAGCGGGCTGCAGGCAGCTTCAGGACCTGGAAATAGCTCATGTGGAGGTGGACCCTTGTGGAGATGGGCAGTCAGCAGCAGAGGGCGCTGTGCTCGGGCTTTTTGAATACGATGAGCTCAAAACCAAGAAGAAGGTCCGTGTCACAACCCAACCGTACAGGAGTGTGGATTCAGCAGCATGGCAGAAAGGTCTTCTTTATGGGGACGGGCAGAACCTGGCTAGACAACTGATGGAAGCTCCAGCCAATCACATCACTCCCACTGTATTCGCAAACACTATAGAGCAGAAACTCTCACCCTTTGCTCACAAAGTGGCTGTCCACAAGAGGCCTCAGTCTTGGATTGAGAGTGAGCAAATGGGGGCTTTTCTGAGCGTTTCTAAAGGCTCAGAGGAGCCCCCTATCTTTCTGGAGCTGCATTACAAAGGCAGTTTAGACTCTGCCCAGCCTCCTCTTGTGTTGGTGGGAAAAGGAATCACCTTCGATAGCGGTGGGATCTCTCTGAAGCCTTCTTCTGGCATGGATGCCATGAGAGCAGATATGGGTGGAGCAGCCACTGTGTGTTCTGCTGTAGTAACGGCAGCAGCTTTGAAACTCCCCATCAATATCATTGGTTTGGCACCACTCTGTGAAAACATGCCTAGTGGAAAAGCAAATAAACCAGGCGATGTTGTCCGTgccaaaaatggcaaaaccaTTCAGATTGACAACACTGATGCGGAGGGCAGACTGATTTTGGCTGATGCTCTGTGTTATGCTCACAGTTTCAAACCCAGagcaataataaatgcagctacGCTTACAGGTGCCATGGATGTGGCCTTAGGTTCTGCTGCTGCAGGCGTGTTTACtaactctgattggctgtgggAGCGGCTGCATAAGGCAAGCATTGTTACTGGTGACAGGGTGTGGAGGATGCCACTGTTTCACCATTACACCAAACAAATAACAGAGAGCGCTCTGGCAGATCTGAACAACATTGGAAAATATAGCCGTTCAGGTGGCGCCTGCACTGCCGCAGCCTTCCTGAGAGAGTTTGTGACAGCTGATCATTGGGCTCACCTCGACATTGCTGGAGTCATGACCAATAAGGATGAAGTTCCATACCTGAGAAAAGGAATGTCTGGAAGACCTACACGTACTTTGGTGGAGTTTGCTGCTGGTTTGGCCTCTGAACCCTAATGTGACCATTGTGAACTTCGGCTTGGCTGCCTCGGAAATACAGTATATTCATGATGATCAGTGTTCAGAACGATTATAAATACGATTGCTGCTGAAATTAGCAGACACTTAGCAATAAGTGATCAACATGGTGACAGGATTAAAAACGTCATCGCTGAAGAAACGTTTAGTTCCAAGAGCAGAAAACAGTATCTAATGGAAACTGCTGACAAGCACTCCTAGACTGTTTCTAAAATCTGATTACTTTGTAACAGGCAACAACTGAAACTAGAGAGTGAAAGACAAGTTTGCTGGActgcctttttaaaatgatattgcattaaaaagtgGCAGGGAACTTTTCAAATTCTGTAATAAATTGAATGGTACCAGTGTTATACcatgtataaatgcacaaaatacagGGGTCAATAAATTCATGTGGCAATGAAGTGAGATAAATGTCATATTGAAAGACTAgtgtgtagatttttttttgccttgaaaACAAAAGTTGTATTACCTAAACAAATGAAATCTATTTTCTTCCATTTGTTTCATTAAACACTACATATATGCTTAAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG:

id description
K11142 LAP3; cytosol aminopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3770 lncRNA downstream 99613 11533320 ~ 11536547 (-) False ptprdb
TU3711 lncRNA downstream 225380 11407565 ~ 11410780 (-) False zgc:195282
TU3709 lncRNA downstream 225380 11407608 ~ 11410780 (-) False zgc:195282
TU3710 lncRNA downstream 225426 11407608 ~ 11410734 (-) False zgc:195282
TU3713 lncRNA downstream 239629 11395734 ~ 11396531 (-) False LOC122343263
TU3821 lncRNA upstream 69765 11711973 ~ 11712523 (-) True G2630
TU3823 lncRNA upstream 71236 11713444 ~ 11715227 (-) True G2631
TU3824 lncRNA upstream 73925 11716133 ~ 11716935 (-) True G2632
TU3826 lncRNA upstream 77520 11719728 ~ 11720175 (-) True G2634
TU3827 lncRNA upstream 78093 11720301 ~ 11721030 (-) True G2635
XM_043235520.1 mRNA downstream 4517 11608561 ~ 11631643 (-) False rbm47
XM_043235512.1 mRNA downstream 4517 11608561 ~ 11631643 (-) False rbm47
XM_043235493.1 mRNA downstream 4518 11608561 ~ 11631642 (-) False rbm47
XM_043235485.1 mRNA downstream 4519 11608561 ~ 11631641 (-) True rbm47
XM_043235504.1 mRNA downstream 17755 11608561 ~ 11618405 (-) False rbm47
XM_043235309.1 mRNA upstream 12696 11654904 ~ 11666734 (-) False kitb
XM_043235301.1 mRNA upstream 12696 11654904 ~ 11666734 (-) True kitb
XM_043241056.1 mRNA upstream 51309 11693517 ~ 11710803 (-) True ecpas
XM_043247889.1 mRNA upstream 82919 11725127 ~ 11729264 (-) True polr1e
XM_043225008.1 mRNA upstream 141427 11783635 ~ 11788666 (-) True apela
TU3761 other downstream 123327 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 137802 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 582219 11053154 ~ 11053941 (-) True G2401
TU3478 other downstream 654794 10953875 ~ 10981366 (-) True G2382
XR_006251247.1 other downstream 822085 10810310 ~ 10814075 (-) False LOC122347618
XR_006250806.1 other upstream 699527 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other upstream 701241 12343449 ~ 12365995 (-) False gria2a
XR_006251305.1 other upstream 1261991 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 1261991 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 1512278 13154486 ~ 13159246 (-) False smim14

Expression Profile