RNA id: XM_043235637.1


Basic Information

Item Value
RNA id XM_043235637.1
length 2340
RNA type mRNA
GC content 0.44
exon number 8
gene id si:dkey-56e3.3
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21707938 ~ 21712568 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTGTCGACTCATTGGCCAGCTTCGCGTTTGGACCCGTACGCATAATCATTTGGAAGGAATTACCGAACTGGTTCAGTAATATTAAATTAGCTTAATAATAGATTTCAACGCTATGGCAAATGTTATAACGTTTCAGACGCAAATCGCTTCGGTTATGGAAGTATTCGCAAACGCTGCTGTCGCAGAAATCTGCAAACTCGTTGAGGAAAGCTATACCGAATTACAGCTTGAAATATCtcaaacacaaaaggagaataaCCTCcttaaaaagaaattgaaagTGCTAGAGATTCGGGATTCGTTCTATAGACGAGCGCACAAACTGAGAAATGAATCGACTGCCTTGACAAAGACCAAAACAGGGCGAAATAGTGCGAACATTTCTTTGCTGTGTAATGAGGGCAGGGATGAAGATGAAGCTCGCTCCGGTAAAGTCTCGCATCTTGAACCCGAAAGAATAGACCAGTCTGTAGTGGATAAAGAGCCAGACATTCTCCTAATTCAAGAAGAGAGACCTGGCAACGTGAGGTGTGAACAGTCAGAAAGAGAAGCAAAGTCTAATGAAAGCCCTAAAGATGGCAAGCAGTACAGGAGTGCAGGAGTCTTTGTGACAGTCCACAGGGAAAACTTCATAGACCAGAACACAGTCCAGCACTGCCATGAAGAGTCTGCAGTGGACAATGAGCCAGATGTTGTCATAATTAAAGAGGAGAGACCTGACAACATGGGCTGTGAACAgtcagaaagagaaacagagactGCTGCAAATCATACAAAGTATGAGAGTGCAGGGGTATTTGTAACAGTCCACAGGGATAACGTCGTAGACCAGGACACAGTCCAGCACTGCCATCAAGAGTCCAATGGAATGCAACCTGATCTCCTTGAGGATGAAATccctgaaatgaatgaaatagGTGAAACCAAAATGGAGAGACATTGTGATGAAGATTCAGTGACTAACCTGCAGCCTGACCCTTCATATCCCTCATGGGTTTCCAGGAGATTTGACAGAACCACAAATCATGCCTCCTATGCTGAATCTGAGTGCAACGGACCTTCTGTGAATCAGTTTTTGATGTACAGAGGGAGCACTGATCCCACTTGTTCCTATGCAACTCCAATGGACTCTAATGGCTTGTCTGTGCCGGATATGGAAGGTCATTTAACACACAACGATGAAGATAACGCCATTTCACAGTCAGACTCGCCTCAGATGCAAAAGAAAGACAAGTTTGTGTGTAAACATTGTGGAAAAGGGTTCTCTCAATCCAGCACTCTCCTCTTGCATCAAAAACTTCATAACAGGGAGAGGCTTCACCACTGTACACTTTGCGGTAAGCGATTCAGTCAGGCGTCTAGTCTGAAAAGACACCACAGCATCCACAGAGGTGAAAAACCATTCAAATGCGTGCACTGTGACAAGCAGTTCGCAGATCAAAGTAACCTCAAAAAGCATGTGACTGTTCACACCGGCGAAAAACCTTATGGCTGTAACCTTTGTGGGAAAATGTTCAACCAGTCTTCAAACCTCAAAACgcacatgaggatccacacaCGTGAGAAGCCTTTTGGTTGCGATCGATGTGGACGGATGTTTGCGCACAAGTACGTTTTGGTGAGACACCAACAAAAATTTTGTTAATCTACTTGAGCTAGACTTCTTAATGTATAGAGTAGGAAATGCCAGTCCTAGGCTGCATTccagtttgttttctttttataaaacttCCCTTCGTCTTGTTCACTTGGGTGTGAACGTGAAAGTGACCTGTGGCCAGTTATGATGACCCATACttggaatttgtgctctgcatttaacccattaAGGCTCAAGGGTCTAACCTTAGTCGTGATATTGAAGGTGGAGAGAGTGCTGGATATTCATCCTCCTGCAAGGGATTAAGGGTATTTCCATATAACCTTGCCTCGTCCACTTCGCAAAGTGGAACACACTTCAAAATGGCAAATTGCTGTCTAAAAGCAGAGTGAAACGCAGTCCTGGAGTGCCgatgtcctgcagagtttcGCTACAACCCTAAtccacacacctgaacaagctaatcaaggtctttaggATTACTAAGGCTACAGGcaggtgagttttttttttcagggttgcAGCTAAACTCTGCTGGAAATCGGCACTCCGGGACCAACATTGCCTACCCCTGAAATACTTACTTTGGTACctatcattcattttaacattaatttacatAGATACATGCAAAATGTTTCTGTGGGTCCCCTGGAACAAGTTTGAAAACCACTTTTCTAGTCCACAAGCATCCTACTAGAAGTGACAGCCTGGTGAATAatctccattttaaaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7183 lncRNA downstream 87357 21612918 ~ 21620581 (-) True G5047
TU7205 lncRNA downstream 156703 21550352 ~ 21551235 (-) False si:dkey-37g12.1
TU7131 lncRNA downstream 297367 20906170 ~ 21410571 (-) False ctnna2
TU7094 lncRNA downstream 989048 20718232 ~ 20718890 (-) False LOC122349798
XR_006251499.1 lncRNA downstream 989065 20711230 ~ 20718873 (-) True LOC122349798
TU7636 lncRNA upstream 331334 22043902 ~ 22044137 (-) True G5327
TU7670 lncRNA upstream 572592 22285160 ~ 22287133 (-) False LOC122348696
TU7671 lncRNA upstream 572650 22285218 ~ 22287133 (-) False LOC122348696
TU7696 lncRNA upstream 635946 22348514 ~ 22382972 (-) False G5366
TU7704 lncRNA upstream 635946 22348514 ~ 22382972 (-) True G5366
XM_043235188.1 mRNA downstream 16565 21687227 ~ 21691373 (-) True mogs
XM_043235930.1 mRNA downstream 28408 21676087 ~ 21679530 (-) True LOC122342104
XM_043235318.1 mRNA downstream 44371 21622365 ~ 21663567 (-) True fbxo41
XM_043235439.1 mRNA downstream 130569 21568102 ~ 21577369 (-) True smox
XM_043234958.1 mRNA downstream 143861 21552161 ~ 21564077 (-) False si:dkey-37g12.1
XM_043234004.1 mRNA upstream 959 21713527 ~ 21734713 (-) False LOC122337558
XM_043234307.1 mRNA upstream 959 21713527 ~ 21734713 (-) False LOC122337558
XM_043233825.1 mRNA upstream 959 21713527 ~ 21734713 (-) True LOC122337558
XM_043233915.1 mRNA upstream 959 21713527 ~ 21734713 (-) False LOC122337558
XM_043244779.1 mRNA upstream 21766 21734334 ~ 21736708 (-) True LOC122348885
TU7069 other downstream 1021198 20683842 ~ 20686740 (-) True G4958
TU6966 other downstream 1338844 20367139 ~ 20369094 (-) False timm10
XR_006250953.1 other downstream 1394990 20290873 ~ 20312948 (-) False zdhhc5a
TU6776 other downstream 1568008 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU7255 other upstream 5571 21718139 ~ 21723065 (-) False G5104
TU7256 other upstream 6532 21719100 ~ 21723065 (-) False G5104
TU7263 other upstream 7492 21720060 ~ 21766284 (-) True G5104
TU7258 other upstream 8936 21721504 ~ 21723065 (-) False G5104
TU7269 other upstream 11819 21724387 ~ 21772762 (-) True G5108

Expression Profile